Scaffold Ga0186596_110518

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0186596_110518

Scaffold Ga0186596_110518

Overview

Basic Information
Taxon OID	3300016969 Open in IMG/M
Scaffold ID	Ga0186596_110518 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic communities from Antarctica in marine media K with soil extract, 1 C, 36 psu salinity and 392 ?mol photons light - Mantoniella antarctica SL-175 (MMETSP1106)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	National Center for Genome Resources
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1005
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location Name	Antarctica
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029609	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186596_1105181	F029609	GGAGG	LRCHNTAQRWMKLDDFNHEFLRTPDAGLHVCVEVVGDDGDVDGQLMTVDDWYWR

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