3300016969: Metatranscriptome of marine eukaryotic communities from Antarctica in marine media K with soil extract, 1 C, 36 psu salinity and 392 ?mol photons light - Mantoniella antarctica SL-175 (MMETSP1106)

Overview

Basic Information

• IMG/M Taxon OID: 3300016969
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212308 | Ga0186596
• Sample Name: Metatranscriptome of marine eukaryotic communities from Antarctica in marine media K with soil extract, 1 C, 36 psu salinity and 392 ?mol photons light - Mantoniella antarctica SL-175 (MMETSP1106)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30439764
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Mantoniella → Mantoniella antarctica	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Antarctica
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029609	Metagenome / Metatranscriptome	187	Y
F091101	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186596_109721	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Mantoniella → Mantoniella antarctica	1083
Ga0186596_110518	Not Available	1005
Ga0186596_113732	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Mantoniella → Mantoniella antarctica	741

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186596_109721	Ga0186596_1097212	F029609	MKLDDFNHELPSASDAGLHVWVEVVGDDGDVDGQLMTVDDWYWR
Ga0186596_110518	Ga0186596_1105181	F029609	LRCHNTAQRWMKLDDFNHEFLRTPDAGLHVCVEVVGDDGDVDGQLMTVDDWYWR
Ga0186596_113732	Ga0186596_1137321	F091101	MMDTVDLAFDIRLTGLRSATHLNGREGVIRGGDPADSERWTARLDDGTCVSVKSANFVHVRRGDYRRVSP