Scaffold Ga0186511_111835

Overview

Basic Information

• Taxon OID: 3300016940
• Scaffold ID: Ga0186511_111835
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in marine media K with soil extract, 18 C, 35 psu salinity and 456 ?mol photons light - Ochromonas sp. CCMP1393 (MMETSP0005)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 821
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 38.702
  • Long. (^o): -72.3667
  • Depth (m): 22.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037232	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186511_1118351	F037232	N/A	NLSLTSSIQKPVLSSPNMPAFKIYDLVNTAYGTGYVTDIRSDCYVVLLTHWALAQGQSPTLFLQEEGMTLIPGALPGTTVKTPFGAARMEAVRNDDIHIAKPINWKLANDTIATMYLNPEAVELDCTAGFNEGDEVMTVYGRGYVEGKREETGDLVVKLRNWALAQGQSPTCYLDPATCVKIPGMEIGAAAKTVWGLMRLLEVRRDGTHVCEAMHWNLADGKPPRAYLAPEAFALLSIKPGSL