Scaffold Ga0186572_114621

Overview

Basic Information

• Taxon OID: 3300016939
• Scaffold ID: Ga0186572_114621
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with seawater and 14nM iron, 19 C, 35 psu salinity and 614 ?mol photons light - Thalassiosira weissflogii CCMP 1010 (MMETSP1416)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 698
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): -65.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051162	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186572_1146211	F051162	N/A	RLTMPLVKIFARNGMTKSIPLTTLQSKLCGIWGTKPETTKLMLSRVDDWTSDHKEDCYVDIRAYGKPERTRDFVLDGMAKVQQAFAEHDLAANVRLETYEGERYFHVPPKNS