Scaffold Ga0186355_108266

Overview

Basic Information

• Taxon OID: 3300016904
• Scaffold ID: Ga0186355_108266
• Source Dataset Name: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: National Center for Genome Resources
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1152
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location

• Location Name: North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.816
  • Long. (^o): -128.666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0186355_1082661	F034938	N/A	PHSISLIHNPNQQHITMMNAAAFPNAQRMHYEGAASSSTGGGGAGHRTMINEAIILPKISADDQLAQRDDEEESTNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAQLHHQTGQPKPSFWAVKDKDAPGDMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDKANLCFTLVSVRTWGVTDCVAPIVHAPNKWY