3300016904: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428)

Overview

Basic Information

• IMG/M Taxon OID: 3300016904
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212067 | Ga0186355
• Sample Name: Metatranscriptome of marine eukaryotic communities from North Pacific Ocean in Standard Aquil medium with 100 uM EDTA, 12 C, 32 psu salinity and 428 ?mol photons light - Skeletonema marinoi UNC1201 (MMETSP1428)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25887788
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	5
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.816
  • Long. (^o): -128.666
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034938	Metagenome / Metatranscriptome	173	Y
F099352	Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186355_108266	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1152
Ga0186355_108610	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1109
Ga0186355_109277	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	1030
Ga0186355_109671	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	984
Ga0186355_109747	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema	976
Ga0186355_113488	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186355_108266	Ga0186355_1082661	F034938	PHSISLIHNPNQQHITMMNAAAFPNAQRMHYEGAASSSTGGGGAGHRTMINEAIILPKISADDQLAQRDDEEESTNANATNMVLWRGNLVAEKEAMALRHVFDDMQDHFGHQRADPRVRFNANLVRPSRDGMWFGDLDFTYNINGEHCNLGYIGMDVCVDLCPKLVHKHGQLRLKNYGKSWVYVYLPQLTLDKFKSYVKTGTGWDVSNEGTVYDPNRNLVAIEAQLHHQTGQPKPSFWAVKDKDAPGDMSFSRIGTVQEVNEHPHQQRVHRGVGIFSVSMEVEGSPNFKPTPRAGDKANLCFTLVSVRTWGVTDCVAPIVHAPNKWY
Ga0186355_108610	Ga0186355_1086101	F034938	GRDIAHNIRNGHCLSIPQPPINIMMMHYTTNNTTDGSSERLSLYPAYSKTAPQPPAHVIRNIADHNNQMAAASRDDEETVADAANTLAEWRGNTVPEKEAKALRHVFDDLQDHFGYQRVDPRVRFNNTNLARLGNGGTWFGDLDFTYDIKGDHCNLAYIGMDVCVDLTPKLVHKHGQPMLKDYGKSWVYVYLRQLTLDKVKSYVKTGTGWDVSDDGTVFDPNRNLVAIEAKMSNQTGQPKPSVWVAKDKNASEQDMSFSRIGTVQDVSSHPSQQRIHRGVGIFSVSMEVEGGPNVRPTPGMGCEANLCFTLVSLRTWGITDCVAPIVHAPSKWY
Ga0186355_109277	Ga0186355_1092771	F034938	MHKMAANEANVNIAAQNEQAGHIDVDEDPNMVLWRGNLVSEKEAKALRHVFDNLQDHFGHQRPDPRVRFNHESLAHPGHGQKWHGDVDFTYDIDGDHCKLNYIGMDVCIDLAPKLVHKHGQPLLNDYGSTWLYVYLPKLSIDRVKSFMKAGTGWDVSDEGFIDDTNRNMVAIKVKLCNESGQPEPSFWVVKDNDASEGRGGMSFSRIGSVQEVAAQPHQKRIHRGIGIFTISMEVDGTSNLEPTPGTWDEANLSFTLVSARTWGVTDCVAPIVYAPSKRHLN
Ga0186355_109671	Ga0186355_1096711	F034938	ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTXXXX
Ga0186355_109747	Ga0186355_1097471	F034938	ATHSACTLLVSQTSSQRHQTMTSITQSETNYASGHWQKNLVSESMGSEAANVIPNIADQRGDHNEEETMVQWRGNLVAEKEAKALRHVFDDLQDHFGHQRPDPNVRFEANLTHPGHGGVWQADLDFTYNIKGEHCKLAYIGMDMCLDLTPKKIHKYGRPMLNDYGESWVYAYLPDMTMDKIKSYVKAGTGWDVSAAGTVVDPNRNLVAIKATLNNQAEQPKPSFWVVTEKDSAQDDVSFSRIGSVQDVHSDTSQKRIHRGVGIFSVSMEVEGTPNFKPSSHSGEVASLVFTLVSVRTWGITDCIAPIVHAPMM
Ga0186355_113488	Ga0186355_1134881	F099352	MVFNGAEAFKGASAPSLEREVSVTSNNNRVLLDSQELNAASGAFNLCCGEAYARFSELKRLKVHPGNMTKERDAVESCSANVYNGIKASCVEQFDAVKSCLSDNPDVWAKCASMRRELEVCSVKNNLGELKKLSS