Basic Information | |
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Taxon OID | 3300016858 Open in IMG/M |
Scaffold ID | Ga0186504_102609 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 664 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0946) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | National Center for Genome Resources |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1157 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .1 | Location on Map | ||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018377 | Metagenome / Metatranscriptome | 235 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0186504_1026091 | F018377 | N/A | QKQVMLKAVFLSLALVAVACAAPTKSIDTYISPPTTVVNPISSNATVKYVKHHHRATLNFACPVDRITVTPNFDNFAVGFEDPLTQIELEDHIGEPSNIEWAHVMQMHFETTDPRGQERQLGTVGGDLGEMLLVLSAIEAQTGKEFTKVEVDRLFKLYLTVMSREKFYYSIDVAAIENLKQACGCPQLNIADPPEAKKQILLNSTHTAGSHGDEFFKKMINDPAPFNVRKQLIHHTTDAFYNVMWNKTSPLHRRVKFVLVKGELDPKGFILIKTPGYCNAQLLAPMISPELCNKQMGIYHGDAAVLLRTEIAGVLLSKTPEEKNAVVRKANELAATALSTLLSDHNEPVYTVSFEGF |
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