3300016858: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 664 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0946)

Overview

Basic Information

• IMG/M Taxon OID: 3300016858
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212216 | Ga0186504
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in modified f/2 media, 18 C, 32 psu salinity and 664 ?mol photons light - Vaucheria litorea CCMP 2940 (MMETSP0946)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10381114
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine salt marsh biome → saline marsh → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001439	Metagenome / Metatranscriptome	694	Y
F007073	Metagenome / Metatranscriptome	358	Y
F018377	Metagenome / Metatranscriptome	235	Y
F039594	Metagenome / Metatranscriptome	163	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186504_102609	Not Available	1157
Ga0186504_104279	Not Available	822
Ga0186504_104765	Not Available	754
Ga0186504_104869	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	742

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186504_102609	Ga0186504_1026091	F018377	QKQVMLKAVFLSLALVAVACAAPTKSIDTYISPPTTVVNPISSNATVKYVKHHHRATLNFACPVDRITVTPNFDNFAVGFEDPLTQIELEDHIGEPSNIEWAHVMQMHFETTDPRGQERQLGTVGGDLGEMLLVLSAIEAQTGKEFTKVEVDRLFKLYLTVMSREKFYYSIDVAAIENLKQACGCPQLNIADPPEAKKQILLNSTHTAGSHGDEFFKKMINDPAPFNVRKQLIHHTTDAFYNVMWNKTSPLHRRVKFVLVKGELDPKGFILIKTPGYCNAQLLAPMISPELCNKQMGIYHGDAAVLLRTEIAGVLLSKTPEEKNAVVRKANELAATALSTLLSDHNEPVYTVSFEGF
Ga0186504_104279	Ga0186504_1042791	F007073	YIALLAFCAAALALDAVGEGATGSPDQVINPVNWHGTWTANNRYGGVMYACPKGDRLYGVYSNAGFFVGRFEGRVVEGTWYEGGRGDRNDWQGSFRIEISADNQEFDGFYYRVTQDGKELRWHESRLGAPYPSNPTHDQCLVPGDEPVLGGFFNNPGQGREPAVYSLCKDEYDQIYGSFGAPDGFIEGWSVDDSTGFHGYRYDSNGRSGAYILRSVSDTVVRGFYWRGRLARQNIETSVPEELHRTSYTAKLDDCERVGPGFLRRLRGPSGDA
Ga0186504_104765	Ga0186504_1047651	F001439	VFALLVVGLACVLSQAVNDEVDPETPLNEPPVAEPSADASKPESAETGIASRLNQATSRTDGPQSEEQHDASGKDMVCVCKRIKKPQNVKCNRTVEIEEPPQDPKTLKELVQCTPGGYNLTQAQRLLLRKEAALRQQMEADQEAFEENQVHLMSTCLSGHCNPEHDLNSATFWTPPKPIEPLACYDRCHDANCKPIWKNPAQGWEDWYACVQQCVSGCYVIVDHA
Ga0186504_104869	Ga0186504_1048691	F039594	AEPQSMRWRVVVTEGEGVLVTVRNHRCPLQASWVKEIWCDADYFDRPWMCDIEIPTRAAHPGDNAFFVAVYGKNATYSIAFWRGHENCHDFTGSGRNEGLDFCAGIVPYTTWRYDNYNNVDSQAECLFEELYQHFRVQPCYTGVTPECNATLQQFACYESFHRCDAQGFFTGTCRQSCDAVVYECANWFETVDLEHYNCTSSRYIDGNAHVCTGNPSFANIDPASQAFLGPDPDLLLFKSSPSNASS