Scaffold Ga0182037_10014676

Overview

Basic Information

• Taxon OID: 3300016404
• Scaffold ID: Ga0182037_10014676
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4638
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015808	Metagenome / Metatranscriptome	252	Y
F043541	Metagenome	156	Y
F064992	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182037_100146765	F043541	GGAG	MVQQLDGQIREYLLQQDRIGEARRPPAPISVRQERRRWERLVGYFILAGIAVVVFALNEYFPDKSGQVVLIVLGGGALAFLGALIYVHGFLWVTKKLGYRADLRSFKLTLASTGIVLFVLWAAWAYAVLSGR
Ga0182037_100146766	F015808	AGGAGG	MKHPDTSCICLVLVNPLALRWRCSVCGGTEILSISTVAAVCDGKIRRGEPQVTSEHARQ
Ga0182037_100146769	F064992	GGAG	MQTLSDHHATHHEGWRTLWLAIVGVMAITLTWNVLMLSLNGISY