NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182032_11771125

Scaffold Ga0182032_11771125


Overview

Basic Information
Taxon OID3300016357 Open in IMG/M
Scaffold IDGa0182032_11771125 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036839Metagenome / Metatranscriptome169N
F075540Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0182032_117711251F075540N/AHPDYDGKINFDELADQMKQVHWTLFLEYNPGQTTHNWTLFPWTGGDVSGGELVPGGMVEGEGTVSQIADQICTVVTKRGANIH
Ga0182032_117711252F036839N/AACEAARLQLIKDAERIGQSMIERASAQDRQIGGNNKTALVMAAISNAPYVSAVCVQTSVS

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