NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182035_11118897

Scaffold Ga0182035_11118897


Overview

Basic Information
Taxon OID3300016341 Open in IMG/M
Scaffold IDGa0182035_11118897 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)701
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041943Metagenome / Metatranscriptome159Y
F084747Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0182035_111188971F084747N/APDFQVAGFGPFHAPGASDMILRNGNTGQFEVYDIVNNQITTANSLGAVGLDFQVGGFAADPATGSMGSSDSTSQLVQAMAGFGGGSGAADGLNTGLASADTSQHPLLTAPQHA
Ga0182035_111188972F041943GGGGGMNIDDSRLIVRFQRLITEMLVEKRLGQRQPGLTDDLYQTWREVGRRGLKETPEYR

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