NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182033_10579124

Scaffold Ga0182033_10579124


Overview

Basic Information
Taxon OID3300016319 Open in IMG/M
Scaffold IDGa0182033_10579124 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)973
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015896Metagenome / Metatranscriptome251Y
F045913Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0182033_105791241F045913N/APLLGSDVMEVFFLMLAVIAGVGVAVFLFVIEPRRKIYDYDPHDPRQ
Ga0182033_105791244F015896N/ALKAVQQNTDTKTVETFTKQTEALIDKLGPEYFKLMDGLEEVDPNSSEAKEFMSILSELDKRCTK

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