Scaffold Ga0132255_105228857

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0132255_105228857

Scaffold Ga0132255_105228857

Overview

Basic Information
Taxon OID	3300015374 Open in IMG/M
Scaffold ID	Ga0132255_105228857 Open in IMG/M
Source Dataset Name	Col-0 rhizosphere combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	549
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location Name	University of North Carolina
Coordinates	Lat. (^o)	35.9	Long. (^o)	-79.05	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002158	Metagenome / Metatranscriptome	589	Y
F096283	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132255_1052288571	F096283	N/A	VKQLSILTNLLGAVAALTLMAACQTVATNNAELAASRKEFLLAQS
Ga0132255_1052288572	F002158	N/A	QYSQKNQQPHSRPKYMKNLITLAGVVSIGVVLALTACETTGTGGGAASQQGQAAAATGGQPGQQLIQGQSLYPTLETAGQNQVEIQQFGGFGPMGTAALGDW*

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