NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132256_100148064

Scaffold Ga0132256_100148064


Overview

Basic Information
Taxon OID3300015372 Open in IMG/M
Scaffold IDGa0132256_100148064 Open in IMG/M
Source Dataset NameSoil combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2352
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUSA: Bethesda, Maryland
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002616Metagenome / Metatranscriptome543Y
F024176Metagenome / Metatranscriptome207Y
F068951Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0132256_1001480641F024176GGAGMKKFLAMRMTMTRFHVVAIAAGLLLAVSGPSFAAKRTLQKPDAGSAAKSQSRAIKSSGSVIHPYSRDPDPYAPGVNWPKGA*
Ga0132256_1001480643F068951GGAGMTDRDKGLNSPKLPMGRLVEAHMALICGKVATWFVGCRL*
Ga0132256_1001480645F002616GAGLEAAVSNNILNWPSRVAIADRIAEYRRPENWNESAIPGDYHAPFGKAEAQAKATRWLWQSYII*
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Institute for Fundamental Biomedical Research
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