Scaffold Ga0132256_100110126

Overview

Basic Information

• Taxon OID: 3300015372
• Scaffold ID: Ga0132256_100110126
• Source Dataset Name: Soil combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2698
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: USA: Bethesda, Maryland
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005252	Metagenome / Metatranscriptome	407	Y
F006226	Metagenome / Metatranscriptome	378	Y
F059199	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132256_1001101261	F059199	AGGAGG	MSKKDEYRQLADGCIAWARLAISDDQREQFLELAKKWLSDAESIDQDI
Ga0132256_1001101264	F005252	GGAGG	MRRTIVALAFLLASAATASAQGLFPSVWQTQRGGVLKVLQVDAGGNFSGVFISSPTGPCPGVPYNLAGSVRGPRVVFQTSRSWTSDCNVTTNWSGRFVSPTTIVARGSALVSGRRVRGVEVFQRI*
Ga0132256_1001101267	F006226	N/A	INMNTAIARRLALGDRVIWMGNDACQPNGCGTVIRITAHQVEVLWEGVTAKRYRRAQLHNLRHENLFFSGGGPSLQAP*