Scaffold Ga0132258_12327140

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_12327140
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011157	Metagenome / Metatranscriptome	294	Y
F050163	Metagenome / Metatranscriptome	145	Y
F089991	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_123271401	F089991	N/A	MAKSPPEKKGPPEVRVHPMDLKLGDRLADERSEWQVIGRPYTTAGGKTAHVRVESMKQPGVTEIRSWGAHELVSVKRGSAGEPTR*
Ga0132258_123271402	F011157	GGAG	MRVAAALVALVLAGCAQASGVRYTFMPCNPGFQDAVVACFYEAGMGPPIAAYDFYADSGIIEQQWKQKYEGCMVRRGYNQVYGTTTWKPKERFNGAAGWPWPNDPPKSAWTWVRTAGAGDRHYYDAVCEP*
Ga0132258_123271403	F050163	AGGAGG	MAQPQLIQIAIESGGHNALGVDQEGAVWRGRIQRATSGEEFIVWKRVRSEFQEG*