Scaffold Ga0132258_11207524

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_11207524
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013520	Metagenome / Metatranscriptome	270	Y
F020740	Metagenome	222	Y
F098318	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_112075241	F020740	N/A	MVVGALVIHKIWFREEAKPVAIENKAPVAKEDKAPAVNKADDAGSQTDESGGKRGLTPDCEKELRHTADLLRFFANRIQMGEKTQSVVADMRQQEKKISA
Ga0132258_112075242	F013520	GGA	MHPAETYRRRAERAERACENARNPEAKRLARIAAHRWHELAELAQRQETEGPPIPVRFRDASEAVHYAQDHKFALYWKGTHAFAKRQRELGDRFVARPVFTCKGATYVGLVPLEERENASGEEPA*
Ga0132258_112075243	F098318	N/A	MTRYKARTSQKGIERKFPHVVEIVVPPGGLGGQLDAMHYFHHARGVQACLGLGRRDKEGRDYLRWYFTGAKMAVSFATEFGGKVINPPYRSHRRRARRSAPSL*