Scaffold Ga0134089_10172126

Overview

Basic Information

• Taxon OID: 3300015358
• Scaffold ID: Ga0134089_10172126
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 862
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004291	Metagenome / Metatranscriptome	445	Y
F007884	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134089_101721261	F007884	N/A	QATRLGSDLESRFWLSYRPYESKNVAREWFVGPVLTWLHSADDRIAGVSESESGGDVLLAGMTTYFGVRPGMHVWLGMDWAVAHSTSPLFMPVRRHISFGITQQFRLHR*
Ga0134089_101721262	F004291	AGGAGG	MNTKKMALFVLLGSLVVVPVAQAQIKHIEMRVEGMT*
Ga0134089_101721263	F000092	GAG	VKQHLGRQSGVQNVEVSLRDGKVDVTPKEDGQIEPAQLLKATYDSGVTAAEMDITARGKIVKDSSGSLALQVEPNRSFAFAPNELSKGLESLAGTQTMVTVLGQLYKKPAGKKKADLAAPLKLLILEVQ