NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137412_10068512

Scaffold Ga0137412_10068512


Overview

Basic Information
Taxon OID3300015242 Open in IMG/M
Scaffold IDGa0137412_10068512 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2887
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011234Metagenome / Metatranscriptome293Y
F017673Metagenome / Metatranscriptome239Y
F021325Metagenome / Metatranscriptome219N
F031564Metagenome / Metatranscriptome182Y
F058368Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0137412_100685122F011234GGAMTLQVIAGPRGRIATKFTPANIQKIKDWVAEGISREEIAKSLGVTVGSLQVTCSRLGVSLRTRQYSNGSGSHWVGAVGHPHIANHPPMIGHMRVDGQFQISLERGGMRRVTALPLTAGDIAQLALAAAVRNVGMTQLLTQVVTTAIKKGMIEEILREPSPEPAPQAAPESS*
Ga0137412_100685123F021325GGAGGMQFDRIVEILGLWPHYVVAGLAVPIVVGVLARKVVLTLFSALLSLLSLTLLFDPASIGPALVVASAMGSFLIALESLIERRRITALNTQIGKLTDRLVTLEAAESRRLAIEVRKKRKTFRRGWPTSSGTADCLQSPPLSVVRLSEFPPTRET*
Ga0137412_100685125F017673AGGAMVDHPHTIDRWDDATGENLMEQIASVGDYLVALATYRAAVQRWPNAKITLRNRARVIERSWRD*
Ga0137412_100685126F031564N/AMKRRWRVVLLRAKGEILGTVEAPDVAAAKAAAAVQFDLDEIQRNRIMVQELA*
Ga0137412_100685127F058368N/ARDNPMRKLEIIGLAIVAATAFGVWSASTVAQSRVGKAAVLAASAPISPHVIMWH*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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