Scaffold Ga0137412_10013995

Overview

Basic Information

• Taxon OID: 3300015242
• Scaffold ID: Ga0137412_10013995
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6491
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006999	Metagenome / Metatranscriptome	360	Y
F078484	Metagenome	116	Y
F080416	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137412_1001399511	F006999	AGGA	MPALLEADEKETMLQALGQFEQARRSTTPCEVSSNACQTREIWLAQQAAQAADQYLNTPDAKESHWRLVAQSIIKYSQARSEAYAAYVHARNQDPDAAEKAYHSVVDPLQQDFVGQLKATLRSDENSHEIAQRFGLVDF*
Ga0137412_1001399512	F078484	N/A	KFLLFGRGEIENSLVRFADRKISEQLRDERRLAEQRTTKHRIQARKSCIADARSYRVARRFPVRAVAQFDWKALIPTRRTYLFGIGWLKKLRDDHLKHWLTAKQAS*
Ga0137412_100139952	F080416	N/A	MIASPNKTISTLRTSVGEFVFRQTSLGCYLELVVGNARWALGLYGTNEAAVRALKNGRTGFRTWHALGRKTAANQIGTLSRWNKGEQTP*