Scaffold Ga0172382_10289100

Overview

Basic Information

• Taxon OID: 3300015214
• Scaffold ID: Ga0172382_10289100
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F004383	Metagenome / Metatranscriptome	440	Y
F075034	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172382_102891002	F003987	AGGAGG	VIPALPCGTFSDSDTPAGAFYVAAFETGDTPHHVGEYRIETLVRALRALQACGYDDVEVGSIERDGKTHLLLIGLDGEARFGDRQLGCIAVAPVGVE*
Ga0172382_102891003	F004383	AGGAG	MPADENPLERAFMARIRADEYREALAALQQEFDERPDVIDLKRRIERCEEERRQAIAKAQAEGVTKQGSFRLKIRTRKTRTVIPERFFARFGAETFVRCSTVAIGKAEAVVGKGAFDDCCEVEVKDLGATVEYVRQEVSE*
Ga0172382_102891005	F075034	N/A	CRSCGCETTADRICPDCAEALRVERAEALGERCRIHRVRRVEDLPVSVLEEMQAEWGRR*