Scaffold Ga0167664_1000195

Overview

Basic Information

• Taxon OID: 3300015208
• Scaffold ID: Ga0167664_1000195
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Samples st-15,16,16 pooled, 1st-3rd transect points, snow/rock/ice interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29522
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (48.65%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.903128
  • Long. (^o): 18.604355

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003800	Metagenome / Metatranscriptome	468	Y
F009579	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167664_100019519	F003800	N/A	MGNEHRDDAPDHRTRADDYSSARIGAAAALTIVLVVLLILDVVVPGYDVSPGTPLPLLGAILALLGLEAGSFWSRVR*
Ga0167664_100019520	F009579	GGCGG	MSGVELVLTFLAGVGMGIALDRWLLPPLVDAWIDRLRRHGQ*