Scaffold Ga0167661_1036612

Overview

Basic Information

• Taxon OID: 3300015167
• Scaffold ID: Ga0167661_1036612
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 922
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.904687
  • Long. (^o): 18.610965
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086047	Metagenome / Metatranscriptome	111	Y
F089338	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167661_10366121	F086047	AGGAG	MQARQIAFPFRTKRPRIHSNPSADLVGRSYVDGDATVTVVSVCLNDEKRVIVTRDQDGHSWSMPAWLMRLIFLEEEGRRAA*
Ga0167661_10366122	F089338	GAGG	MTFIEIEDAVPDQREELLLANNLTLKCSWCGQIIQLHGEELALAMCQGCYQQMLADFVRAQQMRQPATHASDR*