Scaffold Ga0167641_111638

Overview

Basic Information

• Taxon OID: 3300015064
• Scaffold ID: Ga0167641_111638
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7B, Adjacent to main proglacial river, mid transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 991
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.08225
  • Long. (^o): -50.322435
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007987	Metagenome / Metatranscriptome	341	Y
F023404	Metagenome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167641_1116381	F023404	AGG	MPKGVRKSITIPGLLAPAVKRRSGEFGHSIFAPYAVELVCYDLRSDAKHEITVAIARDTQAAQDAVDRELVSRYRPGQKREGLLVQLVERIHHLKDVATRSRHDLPVQLSAVPERVTFPLDIWRLVDVRWQELGYPSFSAYVTGLIRYDLLVGGPHSSITADPRSKLQRKLTRKTLAAHRRGGRRKILLDHLIEEAEG
Ga0167641_1116382	F007987	GGA	MIKQASTDHLEAAGSGSFSSATTIAALLFLAAKFPHRQFNSAELSVLSGVGRTAMSQIKNASDTPFSLGKCTLQRLDAWLAKHPGYKQN*