Scaffold Ga0167635_100021

Overview

Basic Information

• Taxon OID: 3300015061
• Scaffold ID: Ga0167635_100021
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5B, Northern proglacial tributary margin, adjacent to top of river)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66023
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (43.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156461
  • Long. (^o): -50.083665
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007987	Metagenome / Metatranscriptome	341	Y
F010003	Metagenome / Metatranscriptome	310	Y
F047601	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167635_10002135	F010003	N/A	VNERLKLAENAAERRHRGRPLGITLLVIFFAGGALIAWVTMLALAFPGGFLESIWRLKPEARVQFAELGRWSIALMAVVGSACGMAAFGLAKNAEWGRRVALGVLSVNLIGDSLNALLRHDPRTLIGLPIAGLMIWYLVRAKPRR*
Ga0167635_10002169	F007987	AGGA	MEAVESGSFTSTTTIAALLFLAAKFPHRQFNSAELCVLSGVGRTALSQIKNASDSPFSLGKCTLQRLDTWLANHPGFKQQ*
Ga0167635_10002170	F047601	GGAG	VRQSERGEKPQRTLIMTENELKKLVNEAVSLHRALTTYGERLKTLKSELIREAKRHKEDFIITDGGGSRWTASGTDGCIARVNFPAPALLSHIATEDETFDKVLALAGESLDDLFESRHYLKPIADFRDKAADALPRRSAIQLIDLCQVECSPRVSFETAETKSKER*