3300015061: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5B, Northern proglacial tributary margin, adjacent to top of river)

Overview

Basic Information

• IMG/M Taxon OID: 3300015061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121480 | Gp0191521 | Ga0167635
• Sample Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5B, Northern proglacial tributary margin, adjacent to top of river)
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bristol
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22184640
• Sequencing Scaffolds: 33
• Novel Protein Genes: 38
• Associated Families: 37

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Acidobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → Pandoraea terrae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes Of Arctic Soils
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → glacial feature → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.156461
  • Long. (^o): -50.083665
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F000318	Metagenome / Metatranscriptome	1309	Y
F000757	Metagenome / Metatranscriptome	905	Y
F001068	Metagenome / Metatranscriptome	787	Y
F002204	Metagenome / Metatranscriptome	584	Y
F002416	Metagenome	561	Y
F003013	Metagenome / Metatranscriptome	513	Y
F003259	Metagenome / Metatranscriptome	497	Y
F003641	Metagenome / Metatranscriptome	475	Y
F006715	Metagenome	366	Y
F007089	Metagenome / Metatranscriptome	358	Y
F007342	Metagenome	353	Y
F007987	Metagenome / Metatranscriptome	341	Y
F008253	Metagenome / Metatranscriptome	336	Y
F008380	Metagenome / Metatranscriptome	334	Y
F008959	Metagenome / Metatranscriptome	325	Y
F010003	Metagenome / Metatranscriptome	310	Y
F010095	Metagenome	308	Y
F015882	Metagenome	251	Y
F020774	Metagenome / Metatranscriptome	222	Y
F022925	Metagenome / Metatranscriptome	212	Y
F029060	Metagenome / Metatranscriptome	189	Y
F038200	Metagenome	166	Y
F047601	Metagenome	149	N
F048975	Metagenome / Metatranscriptome	147	Y
F051002	Metagenome	144	Y
F055884	Metagenome / Metatranscriptome	138	Y
F057717	Metagenome	136	N
F066625	Metagenome	126	Y
F073513	Metagenome / Metatranscriptome	120	Y
F075199	Metagenome	119	Y
F078868	Metagenome	116	Y
F080405	Metagenome	115	Y
F081909	Metagenome / Metatranscriptome	114	Y
F094577	Metagenome	106	Y
F101284	Metagenome / Metatranscriptome	102	Y
F105289	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0167635_100003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	269833
Ga0167635_100005	All Organisms → cellular organisms → Bacteria	257326
Ga0167635_100008	All Organisms → cellular organisms → Bacteria	149245
Ga0167635_100011	All Organisms → cellular organisms → Bacteria	122361
Ga0167635_100021	All Organisms → cellular organisms → Bacteria	66023
Ga0167635_100049	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	17026
Ga0167635_100067	All Organisms → cellular organisms → Bacteria	8940
Ga0167635_100091	All Organisms → cellular organisms → Bacteria → Proteobacteria	6161
Ga0167635_100137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3530
Ga0167635_100370	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1886
Ga0167635_100845	Not Available	1380
Ga0167635_100937	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329
Ga0167635_101198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1218
Ga0167635_101303	All Organisms → cellular organisms → Bacteria	1174
Ga0167635_101462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1132
Ga0167635_102186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967
Ga0167635_102485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	921
Ga0167635_102607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903
Ga0167635_102745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	884
Ga0167635_103105	All Organisms → cellular organisms → Bacteria → Acidobacteria	841
Ga0167635_103721	All Organisms → cellular organisms → Bacteria	780
Ga0167635_104122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	745
Ga0167635_104608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Pandoraea → Pandoraea terrae	709
Ga0167635_104880	All Organisms → cellular organisms → Bacteria → Acidobacteria	689
Ga0167635_105141	All Organisms → cellular organisms → Bacteria	673
Ga0167635_105385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	657
Ga0167635_106645	All Organisms → cellular organisms → Bacteria	593
Ga0167635_106857	All Organisms → cellular organisms → Bacteria	582
Ga0167635_107071	All Organisms → cellular organisms → Bacteria → Acidobacteria	572
Ga0167635_107306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561
Ga0167635_108310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	523
Ga0167635_108579	All Organisms → cellular organisms → Bacteria → Acidobacteria	513
Ga0167635_108793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0167635_100003	Ga0167635_100003111	F003013	MSRVKTTAKRRVKSEGALLDQASTNLLRALKRDMLKKEGRVDYDKLRKDGYSNRLLAKLEDA*
Ga0167635_100005	Ga0167635_100005137	F008380	MSHEKPTAQSPIPMHVSTLPGLPAGARELGVVYASVEGVNDHSFDECLAELTHKAQALGATALIGMQLVQSQFQWNQRTSLLATAIKT*
Ga0167635_100008	Ga0167635_100008125	F022925	VYAKLSPCELGTTGNAILGLTSEERQRLAVWFEENRRELLGDEPDELSEEQKAEVVRRRELALAHPELLEPWNGTIERVRERLHEFGRQKTSPR*
Ga0167635_100011	Ga0167635_10001171	F066625	MPNTDLNPHHSEKLMKSPMNRILTTALAASILLLATARAQDVKFATDNLKYSRDFYAKVHFIAIAKLPKPFKYDRYPSAGPERIQCDEGTYSRQPGKAWLHLNDRGRSGEPIDHAERDRFVMTFALREGWGRTGEPVDKETAGKLDGWIKLIDAALNAAPIAVKLTDKSETGRAQWVFEAPSENPNGVPTRFTFRKPISDKNENVLLHEFSGSIRLEGNKAVPAGATDAVRLGFGYMMKSDGGYEVSEFVWEEMQAAETDESKSKSAESPSPSR*
Ga0167635_100018	Ga0167635_10001850	F038200	MKDRLTLGLSLSLVCWLGICLLAESAEPKDITRDKSPDGKFALRITKDDMGGSAAIIGLKDNGELATLETYQNYTEEAHLVWSKDSQRVAYFEPDRRGGSTTAYFWGGSGFKEIALPEIPGCHVPPAKESDGYVKDIENITRPVKWLPSGELVLAVHKTRITESGATGSCGQTITIAFDANRKASVESVKEAKSR*
Ga0167635_100021	Ga0167635_10002135	F010003	VNERLKLAENAAERRHRGRPLGITLLVIFFAGGALIAWVTMLALAFPGGFLESIWRLKPEARVQFAELGRWSIALMAVVGSACGMAAFGLAKNAEWGRRVALGVLSVNLIGDSLNALLRHDPRTLIGLPIAGLMIWYLVRAKPRR*
Ga0167635_100021	Ga0167635_10002169	F007987	MEAVESGSFTSTTTIAALLFLAAKFPHRQFNSAELCVLSGVGRTALSQIKNASDSPFSLGKCTLQRLDTWLANHPGFKQQ*
Ga0167635_100021	Ga0167635_10002170	F047601	VRQSERGEKPQRTLIMTENELKKLVNEAVSLHRALTTYGERLKTLKSELIREAKRHKEDFIITDGGGSRWTASGTDGCIARVNFPAPALLSHIATEDETFDKVLALAGESLDDLFESRHYLKPIADFRDKAADALPRRSAIQLIDLCQVECSPRVSFETAETKSKER*
Ga0167635_100049	Ga0167635_10004911	F000318	MNLPCRFIIPSILASLCFLALPTPAQVTGEKKPSPAADVPSSADAAALQKKASEAQARIRGNEGDSGQLKRAVKINEVALAKEILLRNGFTAKDLEKAKITLRTGGGKGGEDTITISVTCCDPKEITIQRTLENFTK*
Ga0167635_100067	Ga0167635_1000674	F007089	VTATQIIEEIKQLDPQQQLGVIRFAYQLDAERQLTGDELSGLAEHMVRTTDPAEQAKIREQIIRGFYGRRQNA*
Ga0167635_100091	Ga0167635_1000911	F080405	KLCVLLYHTQCQGRIFLPCHIPYDTVRGVRDKESTAITITLPAALDRALQALADEKHCGNKSAAIREVLYKEAGMQGKLRMNEKKDNDAVVKAEHRSVKYGSRKTKSKK*
Ga0167635_100137	Ga0167635_1001371	F051002	REGWLLGVVRRLNKVSNEEVEAGVNIIAERMVAVTLSAKRRPNEDMGYVVNGLDMSTMGERFEGLYLPPPSRPDKPLAMKTVIVPTSEYAEGRNVVLTTAHSVYTVSLRHLVEQRPDWSWATIQIVEKKSRDS*
Ga0167635_100370	Ga0167635_1003702	F007987	MIKQASTDHLDAAGSGSFSSATTIAALLFLAAKFPHRQFNSAELCVLSGVGRTAMSQIKNASDTPFSLGKCTPQRLDAWLAKHPGFKQD*
Ga0167635_100845	Ga0167635_1008453	F008959	MPNTHRALPVLLRICADIDRLFLVEVGPFGKRLAEDARVTWLAAGNKNKPSDVEEYVALLAANIDDREQRDTFVTEAMECIKL*
Ga0167635_100937	Ga0167635_1009373	F010095	VLAKTLPLVLLCACASTAQLAMVDRPEFAEMARPYAQQLQAVGITRVISPGGGDMVQLETGYGSVYVRYPSASDPLTFVLDIGPDGLRATAASFDRAKDGQPLAA
Ga0167635_101198	Ga0167635_1011981	F105289	RENDWLANAVYVGAPPSEQKEDFLTHLVPYVIRNFTSFDPNDLREFVTAVQASAGGPK*
Ga0167635_101303	Ga0167635_1013032	F002204	MEDEKTGPEISYQIRVKPGRAGTDPNAPDWEVLELEDGVSKNTADIYDNMTEAEAHQIAGMWRQKKAEAEAPVSDAVN*
Ga0167635_101462	Ga0167635_1014621	F020774	RFATYAAPGGAWEIRDVSQTGYRLIAPMTIISSMTLGTLTAIRGQGDALWMLGIVRRMKRLTAERAEIGLQMIANNLVGVELVEQKRGDADYSVDGEIPTTSSRRFYGLFLSLKKRESESAVQTLIVSAGEYQPGKRLRMSVAKTSNSIAFGRLLEQQPDWIWATVESLDYTHRDQHVSLAPGGP*
Ga0167635_102186	Ga0167635_1021861	F075199	MKFHVVYEKAPGGAQSPVRVVEQKTGQGVGWIDRYLDREYVRRLSNKSLRLYAHNLLHFVRWWASVHDTGDIAESDLSESMLLDYIRFQSAQ
Ga0167635_102483	Ga0167635_1024831	F006715	LLAFTLTVAVLISSGTATAQTADDIIRVQTRVVFLDALVKEKRTGQNISDLKLENFQVFDDGKPRPISYFTREGQARKPLALVLILDLREDGAGRFLKRPEVLKAM
Ga0167635_102485	Ga0167635_1024852	F048975	GDVTQDRVVSLSDLGQVNAALAQPVTAANFLKDVNANGTVSLADKGITNANLAKALPPP*
Ga0167635_102607	Ga0167635_1026071	F055884	MNGVSGDTMTDHPYLLFNQSPEELRRIGARGGRAYGRNQRARRQAQLHKPLEAIQRPVPHVETIAEAIAALDAQFAWLRGADKPTSTARWRPS*
Ga0167635_102745	Ga0167635_1027451	F001068	VPESPSLLDDLRNQYEAVRKSETEHTDVEGFRDIDARMRKAFRWLEKAITYLDGLKPAIDHRFDLGHGLVFESPRFGRGSVGQHEHRIVGFPVIDEINIYYEISASKPISLDVAPGNVALAEKALDDAGLQYASRRVEDSSGNVRKCAISVPPAVPAAVSFRVDYQTGIVTVALFNVDRLDRITLEFHSKAIEEPVLEDLVRLILGRDSAFLRRAPLAGLHARPSAPT*
Ga0167635_103105	Ga0167635_1031051	F008253	MSRQLETTLTEAAAKNLSAAATLEWLADMELEARKQRAIDRRFKCSR
Ga0167635_103721	Ga0167635_1037212	F000265	MPELRGIQATEDIKAEWKRAYSLYLQAPGDPYDKKNDRTERIGYVAKALELTRKQAKRRIRNYEAWQRNIKKGLVEA*
Ga0167635_104122	Ga0167635_1041221	F073513	MRAAPGVLALLVGVGLVTGPWWSSTLPKSDYPLVIVLGIVFAAIGVFAAVPDSWPRLRTLSFALFMGTFGLVCASLTLTPLHPAADGTWTIGGIPGFIGGPIPWWARLIAGFFAIVCLGTAALGLWGVVREFFGRRSEGGRDPPA*
Ga0167635_104608	Ga0167635_1046081	F078868	MNAKPTLARRHVVTTIVAAALSALIAIGLLTAVTDLFQRDGAPFEQVVIAEHICANAFVSERETCVRLYLAASRVRNVASR*
Ga0167635_104880	Ga0167635_1048801	F007342	MFNNLIESSSHAREFKRRGSFVLFTSAIYALLFVIAGVASIYAYDARLSDPEVEITMLN
Ga0167635_105141	Ga0167635_1051412	F015882	MTWKQIKEAVEQAGVEDSEEIGLIQCENGAGDHTFHKVRLGKTVKLAENVAIEQARKDAKGCAV*
Ga0167635_105385	Ga0167635_1053852	F057717	MSMMLTSEEILDKVRRAFAPFHVVAELQDYHKKLGFRVYDLDSETIETFEGSLIQDLRTPANLKQLILQARAAVERKNKVLKPWSF*
Ga0167635_106645	Ga0167635_1066451	F003259	MKHRRFSGLLISTVLPIMLLGAAGVASGKSEIKGAAILDHPCGKVSVKQMGLVHAGKVDEANKLTTKEMQGQWDSTPAKDKAMMTGMMKEMSQTEAQYSADIKAYGVLVVDGPSATLTVKKETKDKNGSSSET
Ga0167635_106857	Ga0167635_1068571	F094577	MSDSETNSYDYLRRKRYVVHEEHEQFIRPETLAEMSEYETIELYSRERIRELSQNGLIKDELKARIEDLARLRREHPEGSNPECICMDMITELISKLDLADFRTLRIERIIDDSGE*
Ga0167635_107071	Ga0167635_1070712	F000757	MSYRALLFCADEKASRAVTQVFKELDFYVESSNEPFDAVKRLTAHHFDALVVDCDNEENATLLFKSARNSASNNNSLAVAVVEGQAN
Ga0167635_107257	Ga0167635_1072571	F101284	LSQLLAAAGQPGEALALRRAASSWNDANEAKYLGPSRRLRAGILLLDGKQDAALVELAESFRSGFYVQWWYTIKYDPLWLPLHGDARFRAIAFDVRRYVDNQRSELEALRRQGAVPNRARPAALH*
Ga0167635_107306	Ga0167635_1073061	F002416	MNNLIYLADVPGLEESRAAQVGRRLLVIAFGLKALNGVIASALLIVLGVVSASAQTPGGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCA
Ga0167635_108310	Ga0167635_1083102	F003641	MKSKHRPETKAVRGGTDLTRKNGPLVTPIYQTSTFEVVDNDEQLRATKTD
Ga0167635_108579	Ga0167635_1085791	F029060	MKLTVRAFLACVICLITLTATLAKKPGTSVAVVVPGVYENFTIGKGSGDLEGMRVVLVSAGDGHYAIVQIAQGGAEDPKPEFVPVTVKGATVNFTVGEEKFTGKVTATGLSLKNSSGGTQMLKRKPCGSYFK*
Ga0167635_108793	Ga0167635_1087932	F081909	VLDQVNVDEHPALADLRSGYFPGASLLLERHRMDVQERCGGLQIERVDARTLSACVASNPIDLSKPP