Scaffold Ga0134442_1000119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134442_1000119

Scaffold Ga0134442_1000119

Overview

Basic Information
Taxon OID	3300014971 Open in IMG/M
Scaffold ID	Ga0134442_1000119 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from obese patients in Germany - AS65_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hohenheim
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	70809
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	60 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Source Dataset Sampling Location
Location Name	Germany
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134442_100011931	F026489	GGA	VAKENQKTTSDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF*

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