3300014971: Human fecal microbial communities from obese patients in Germany - AS65_3

Overview

Basic Information

• IMG/M Taxon OID: 3300014971
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121297 | Gp0151614 | Ga0134442
• Sample Name: Human fecal microbial communities from obese patients in Germany - AS65_3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hohenheim
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 150910274
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Obese Patients In Germany
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Germany
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F055715	Metagenome	138	N
F058154	Metagenome	135	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F078004	Metagenome	117	N
F102166	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134442_1000119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	70809
Ga0134442_1001146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	15801
Ga0134442_1002691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7969
Ga0134442_1008699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2549
Ga0134442_1009183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2412
Ga0134442_1011929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1829
Ga0134442_1015601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1372
Ga0134442_1017016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1251
Ga0134442_1023545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	914

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134442_1000119	Ga0134442_100011931	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF*
Ga0134442_1001146	Ga0134442_10011462	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRGVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRMRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESHAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0134442_1002691	Ga0134442_10026916	F055715	LTKANEFDRINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0134442_1008699	Ga0134442_10086991	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRIQAPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGRPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAXXXXFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIEN*
Ga0134442_1009183	Ga0134442_10091833	F073573	MPTIVSFYQRFPNEAPPLHLSAFDRTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSEGMLFQVRRMELRTGDTTYAILPDNVQQYTKRGDTGGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCGESAITYQPAFLWYKDYCTKA*
Ga0134442_1011929	Ga0134442_10119291	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMHAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVDVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPAAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETNLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDMLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAE
Ga0134442_1015601	Ga0134442_10156011	F073574	MLLPAAVRPYAADVDDTASRVRCAIVLNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQTDDDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEEVSAFANPGDAFTWI
Ga0134442_1017016	Ga0134442_10170162	F042910	PLADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*
Ga0134442_1023545	Ga0134442_10235452	F102166	MEETWRISPEMRAFLMKKLLSLLMAFSLVLVPMLSFADESSGATQNIYNMLLEELTAANLSMTPYDDINRIYLGYMLEKNALGNAVVIFDAHSDGFTIGVGYGKPIDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMW
Ga0134442_1030122	Ga0134442_10301221	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSHGTTFGGHPVS