Basic Information | |
---|---|
Taxon OID | 3300014969 Open in IMG/M |
Scaffold ID | Ga0157376_10000005 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 443695 |
Total Scaffold Genes | 374 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 252 (67.38%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012831 | Metagenome / Metatranscriptome | 277 | Y |
F035523 | Metagenome | 172 | Y |
F095930 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0157376_10000005141 | F035523 | AGTAG | LLGALALFIGYGIEWVSSSLFRNAASTEQVRAWLRVFKVSPPLSGAGLAVLLLSGGYLASLSGAMKQGWIPATLLAVGMALVLGFALILPRMNRIRKVLPSMNEPISAELHSRLADPVLLGAIRVRVLLAAGIVYLMAAKLPFMPSLVALAVALFVGALFSVPVIRRPSST* |
Ga0157376_10000005340 | F012831 | GGAG | MSRKLDGSICKGLMRVLGALIFLTAADCCARPAAAQDQDDEIVATLAGGRVIVHATRENIIFIAINEPIEEAGSVPPRVISLDSHHVGVLFGSSEWRIPAEPNPIRLDKQLAHIANQDPKYAGSYNGDSEPDLETIGVAFLEKLTPLAARLHHKLDFPSDQPLFELVVVGFGPADYGPEVWTLEYRLVQEMISTRGNFWQTRVLRPRFEQIYPPEKKAPKKLVETCYPGACKGPTLQQLIEGNEPSLAKLSGSDTKWAKAADFIAKGQAQKALTPDTAAFLRAAIPVIYTNRQFVMGTIEEQHGFDWIVPPEEPVERAKQDDKNRPPEAPTLRRRVDPPR* |
Ga0157376_1000000554 | F095930 | N/A | VAPSDHPVPVTAQITIVRNSPADTQTRQIKIFLDGQSQGELMYGDSTTLDVSAGTHTIRVDNTWNGKEITIQIRAGEHLQFLTRSSAGKFAWFLLGFLGAGPMQVSIEPLPSRS* |
⦗Top⦘ |