Scaffold Ga0134538

Basic Information
Taxon OID	3300014964 Open in IMG/M
Scaffold ID	Ga0134538_1001394 Open in IMG/M
Source Dataset Name	Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hong Kong
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300014964 Open in IMG/M

Scaffold ID

Ga0134538_1001394 Open in IMG/M

Source Dataset Name

Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hong Kong

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20289
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (44.44%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20289

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (44.44%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Source Dataset Sampling Location
Location Name	Hong Kong
Coordinates	Lat. (^o)	22.3356	Long. (^o)	114.1826	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hong Kong

Coordinates

Lat. (^o)

22.3356

Long. (^o)

114.1826

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0134538_100139415	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK*
Ga0134538_10013946	F075481	AGGAGG	MRLRISLRAVFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGQRDSTVTTDSIGIDKTITGIEDIDKKTDIEHEDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL*
Ga0134538_10013947	F089590	AGTAGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKKWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS*
Ga0134538_10013949	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVKGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLIVSNTLYVNDGIPVDKLSRSKKLIYIDLQYIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIYPGPSDIWNYFDINTLPFFEVDKINPNITNFYFLNDWVSGGRRTGWNDDNMSGRGLEHLTSFIADHSNSLRMDKLPDYIYEMRAITWFDVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYSATYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0134538_1001394

Overview

Ecosystem & Geography

Associated Families

Sequences