3300014964: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8

Overview

Basic Information

• IMG/M Taxon OID: 3300014964
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121305 | Gp0151710 | Ga0134538
• Sample Name: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hong Kong
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 440514803
• Sequencing Scaffolds: 11
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Stipodae → Brachypodieae → Brachypodium → Brachypodium distachyon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Hong Kong
• Coordinates
  • Lat. (^o): 22.3356
  • Long. (^o): 114.1826
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020492	Metagenome	223	Y
F020828	Metagenome / Metatranscriptome	221	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F059631	Metagenome	133	Y
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F093883	Metagenome	106	N
F099451	Metagenome	103	N
F102167	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134538_1000070	All Organisms → cellular organisms → Bacteria	125153
Ga0134538_1000616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	36114
Ga0134538_1001394	Not Available	20289
Ga0134538_1001828	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	16417
Ga0134538_1002954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	10700
Ga0134538_1003167	Not Available	10037
Ga0134538_1004061	All Organisms → cellular organisms → Bacteria	8026
Ga0134538_1011979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3261
Ga0134538_1049353	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	1200
Ga0134538_1132154	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	626
Ga0134538_1145764	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Stipodae → Brachypodieae → Brachypodium → Brachypodium distachyon	588

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134538_1000070	Ga0134538_100007088	F099451	MSEIKTVGDLRKVIANLDDSFKIEMRIRRKLTDEELKYMPYPYPYETEYSTLEFDDIGYSDKELCLGVERGQNNE*
Ga0134538_1000616	Ga0134538_100061610	F058555	MKLVYSQHKKKTMGTKISILHKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAKSLICPVDYKPVTNKDGKKVTAIRYSNKKDNIRGSGMVIEKKCKQIVAYLTIINVQKHVFLRNRMNKGYRDRIEINTDDFIDILSDGIAYFCYRHVLENCHEDTDYQLKTLKAYAEGEIRIALADVMIYTHKVKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVSYLMIELSKRLTSMGMHNISQATMYRYINMFLDMCKKTISDLYDEVKKNNGIVNLKDRNKVNIGHLRLSYRGTKMYVLISADYIKNVFLGEKPVEMSKAG*
Ga0134538_1000616	Ga0134538_100061625	F102167	MDINQIKKYLPAGWNVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK*
Ga0134538_1000616	Ga0134538_100061636	F057001	MTGKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDQDKNKKLKINEIEDIAILGSSHKRFGYNEPIEFDFGIYYDTFNDSDKRIVKCAIPIKRYTFNLIAKCVTYYLTHPKNER*
Ga0134538_1000616	Ga0134538_100061642	F080673	MDEIIKLQDEILSYFRNNITKDEAYYILTTDKDIIGILIADKKDGSKRIKILDMEYTVEKDDMLLLFDTDRIIDECLLVATYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMDDNKERIDFMFIYFMARLCV*
Ga0134538_1000616	Ga0134538_100061647	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGLGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNHNKKLFKEI*
Ga0134538_1000616	Ga0134538_10006165	F093883	MEEDKDIKKEIRYYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE*
Ga0134538_1001394	Ga0134538_100139415	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK*
Ga0134538_1001394	Ga0134538_10013946	F075481	MRLRISLRAVFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGQRDSTVTTDSIGIDKTITGIEDIDKKTDIEHEDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL*
Ga0134538_1001394	Ga0134538_10013947	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKKWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS*
Ga0134538_1001394	Ga0134538_10013949	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVKGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLIVSNTLYVNDGIPVDKLSRSKKLIYIDLQYIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIYPGPSDIWNYFDINTLPFFEVDKINPNITNFYFLNDWVSGGRRTGWNDDNMSGRGLEHLTSFIADHSNSLRMDKLPDYIYEMRAITWFDVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYSATYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA*
Ga0134538_1001828	Ga0134538_100182819	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCASDKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
Ga0134538_1002954	Ga0134538_100295413	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIESMVGDNIREGYDMFKEEAEMVNETDRSKIEEFNKKLDHDQM*
Ga0134538_1002954	Ga0134538_10029543	F076653	MTIRDKYFGWKDIFFSRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRMEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYSKGFKERLAKRFNRSLSGGGEPFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0134538_1003167	Ga0134538_10031674	F077313	MGKYVIKRKIPKYQDAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSNLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKANIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMRASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0134538_1004061	Ga0134538_10040618	F050794	RDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMCDLLDELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMIETRYNRFVW*
Ga0134538_1011979	Ga0134538_10119793	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVILYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAAKAIMMEKDDDEDN*
Ga0134538_1049353	Ga0134538_10493533	F020492	MGLQAALLTSAALTAEVNALKESLERSENELGLAKKQLEDKEGE*
Ga0134538_1132154	Ga0134538_11321541	F020828	ELAMKDLIVRMWPGEPLPDSYFGLIKRMVNACPQLEVIKQSICIEGARRALARAKVHWGKLDAEKLVKDGPPPGKEHRKPENYCKDVLKGACLVADECSRDVIFE*
Ga0134538_1145764	Ga0134538_11457641	F059631	NISAFIIVCEAFLRIQPHFGLWLKTFNVKPKVVGIQQAECGGAMVGKMPNVLWLEGSFVETIKGWQSGWFYITEPRDTNWVAAPEFRSGIPTRLTSWKEKGLFWGSLTELTGLQTCIRNMMSKKIKLVNVVQVMLFRRILLCQRRAFNLWEFDPTEHQTLQELFDTMHKDVWKVLFKGAEVPPPLTEDRGLSAKRP