Scaffold Ga0134538_1000616

Overview

Basic Information

• Taxon OID: 3300014964
• Scaffold ID: Ga0134538_1000616
• Source Dataset Name: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hong Kong
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36114
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (35.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Source Dataset Sampling Location

• Location Name: Hong Kong
• Coordinates
  • Lat. (^o): 22.3356
  • Long. (^o): 114.1826

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F093883	Metagenome	106	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134538_100061610	F058555	N/A	MKLVYSQHKKKTMGTKISILHKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAKSLICPVDYKPVTNKDGKKVTAIRYSNKKDNIRGSGMVIEKKCKQIVAYLTIINVQKHVFLRNRMNKGYRDRIEINTDDFIDILSDGIAYFCYRHVLENCHEDTDYQLKTLKAYAEGEIRIALADVMIYTHKVKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVSYLMIELSKRLTSMGMHNISQATMYRYINMFLDMCKKTISDLYDEVKKNNGIVNLKDRNKVNIGHLRLSYRGTKMYVLISADYIKNVFLGEKPVEMSKAG*
Ga0134538_100061625	F102167	N/A	MDINQIKKYLPAGWNVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK*
Ga0134538_100061636	F057001	AGG	MTGKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDQDKNKKLKINEIEDIAILGSSHKRFGYNEPIEFDFGIYYDTFNDSDKRIVKCAIPIKRYTFNLIAKCVTYYLTHPKNER*
Ga0134538_100061642	F080673	N/A	MDEIIKLQDEILSYFRNNITKDEAYYILTTDKDIIGILIADKKDGSKRIKILDMEYTVEKDDMLLLFDTDRIIDECLLVATYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMDDNKERIDFMFIYFMARLCV*
Ga0134538_100061647	F078006	N/A	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGLGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNHNKKLFKEI*
Ga0134538_10006165	F093883	N/A	MEEDKDIKKEIRYYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE*