NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134315_1006361

Scaffold Ga0134315_1006361


Overview

Basic Information
Taxon OID3300014962 Open in IMG/M
Scaffold IDGa0134315_1006361 Open in IMG/M
Source Dataset NameSurface water microbial communities from Bangladesh - BaraHaldiaSW0309
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1957
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location
Location NameBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048001Metagenome149Y
F078384Metagenome116Y
F085686Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0134315_10063611F085686GGAGMDLKGQSKLLLEAAQRYAQEISPEAIIALEERGISEEIAALYMLGTVTEPMNGHELHTGWISIPYI
Ga0134315_10063613F048001AGGCGGVANTEIQYLKNEIKQLKADMANLIMALIELKVFKIKVDENGNAVYDTGKDGKSEVQ*
Ga0134315_10063615F078384AGGTGGVKYDFFGQEWFGKCGACSKDMYAPTKGEYLVAFALHTHSKDCLGGW*

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