Scaffold Ga0134315_1002849

Overview

Basic Information

• Taxon OID: 3300014962
• Scaffold ID: Ga0134315_1002849
• Source Dataset Name: Surface water microbial communities from Bangladesh - BaraHaldiaSW0309
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3110
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Source Dataset Sampling Location

• Location Name: Bangladesh: Bara Haldia, Matlab upazilla
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015583	Metagenome / Metatranscriptome	253	Y
F042870	Metagenome / Metatranscriptome	157	Y
F074829	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134315_10028494	F074829	AGG	MSAPLILCVGVVYLAVAIDQAMKGSWMGLAWAGYALANVGLALSAK*
Ga0134315_10028495	F042870	AGG	VSGEALPDSKLPWWDNHYEGTYSDDPENGYPYDVGTKVQE*
Ga0134315_10028498	F015583	AGGA	MRSLVIAIALLCSTAVASDVIVTHGPVVISAQDHATIIARRGTLGHSRCSQIEGIGSGRTPEEARRNCCYYGRRVIVEEGVAWSPVARRWFAVIRYR*