Metagenome Family F074829

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074829
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	46 residues
Representative Sequence	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWFGYALANVGLAMAAK
Number of Associated Samples	72
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.15 %
% of genes near scaffold ends (potentially truncated)	19.33 %
% of genes from short scaffolds (< 2000 bps)	57.14 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (48.739 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (28.571 % of family members)
Environment Ontology (ENVO)	Unclassified (66.387 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (58.824 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.67% β-sheet: 0.00% Coil/Unstructured: 45.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d3bvfa1	3bvf	0.94762
a.25.1.1: Ferritin	d4iwka_	4iwk	0.94455
a.25.1.1: Ferritin	d1z6om1	1z6o	0.94257
a.25.1.1: Ferritin	d3ka8a_	3ka8	0.9414
a.25.1.0: automated matches	d7o6ea_	7o6e	0.93808

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF05136	Phage_portal_2	15.13
PF05876	GpA_ATPase	12.61
PF05866	RusA	10.92
PF01555	N6_N4_Mtase	2.52
PF07120	DUF1376	2.52
PF01726	LexA_DNA_bind	2.52
PF12840	HTH_20	2.52
PF13479	AAA_24	2.52
PF09956	DUF2190	1.68
PF09339	HTH_IclR	1.68
PF05119	Terminase_4	1.68
PF01844	HNH	0.84
PF01391	Collagen	0.84
PF08241	Methyltransf_11	0.84
PF10124	Mu-like_gpT	0.84
PF13455	MUG113	0.84
PF10520	Lipid_desat	0.84
PF13384	HTH_23	0.84
PF13884	Peptidase_S74	0.84
PF04448	DUF551	0.84
PF01381	HTH_3	0.84
PF03118	RNA_pol_A_CTD	0.84
PF01135	PCMT	0.84
PF05014	Nuc_deoxyrib_tr	0.84
PF05050	Methyltransf_21	0.84
PF00145	DNA_methylase	0.84
PF13589	HATPase_c_3	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG5511	Phage capsid protein	Mobilome: prophages, transposons [X]	15.13
COG5525	Phage terminase, large subunit GpA	Mobilome: prophages, transposons [X]	12.61
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	10.92
COG0863	DNA modification methylase	Replication, recombination and repair [L]	2.52
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	2.52
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	2.52
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	2.52
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	1.68
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.84
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.84
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.84
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.84
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.84
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.84
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.78 %
Unclassified	root	N/A	46.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	48.74 %
Unclassified	root	N/A	46.22 %
Viruses	superkingdom	All Organisms → Viruses	5.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.74 %
Unclassified	root	N/A	46.22 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	4.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	28.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.04 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	4.20 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	27.73 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	4.20 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.68 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	14.29 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	12.61 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4.20 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.68 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.68 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	14.29 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	7.56 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	3.36 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	3.36 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.68 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.68 %
Isosphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales	0.84 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.84 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	14.29 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	7.56 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.36 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.68 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.68 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	0.84 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.84 %
Isosphaeraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	14.29 %
Pirellula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula	5.88 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.36 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.68 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.68 %
Isosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Isosphaera	0.84 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.84 %
unclassified Myoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	14.29 %
unclassified Pirellula	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula	5.88 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.36 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.68 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.68 %
Isosphaera pallida	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Isosphaera → Isosphaera pallida	0.84 %
Synechococcus phage S-CRM01	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01	0.84 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.22 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	14.29 %
Pirellula sp. SH-Sr6A	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	5.88 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3.36 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.68 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.68 %
Isosphaera pallida	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Isosphaera → Isosphaera pallida	0.84 %
Synechococcus phage S-CRM01	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01	0.84 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002835\|B570J40625_100069614	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Isosphaera → Isosphaera pallida	4687	Open in IMG/M
3300002835\|B570J40625_100211352	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2084	Open in IMG/M
3300004125\|Ga0066182_10128975	Not Available	618	Open in IMG/M
3300005525\|Ga0068877_10006768	Not Available	8708	Open in IMG/M
3300005525\|Ga0068877_10119785	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Synechococcus phage S-CRM01	1634	Open in IMG/M
3300005525\|Ga0068877_10324412	Not Available	885	Open in IMG/M
3300005805\|Ga0079957_1000904	All Organisms → cellular organisms → Bacteria	27154	Open in IMG/M
3300005805\|Ga0079957_1331597	Not Available	673	Open in IMG/M
3300006637\|Ga0075461_10009898	All Organisms → cellular organisms → Bacteria	3156	Open in IMG/M
3300006637\|Ga0075461_10063457	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300006637\|Ga0075461_10147210	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	723	Open in IMG/M
3300006641\|Ga0075471_10030668	All Organisms → cellular organisms → Bacteria	3099	Open in IMG/M
3300006802\|Ga0070749_10074030	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2040	Open in IMG/M
3300006802\|Ga0070749_10201941	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300006919\|Ga0070746_10434125	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	585	Open in IMG/M
3300007216\|Ga0103961_1032496	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300007234\|Ga0075460_10148587	Not Available	818	Open in IMG/M
3300007234\|Ga0075460_10248416	Not Available	593	Open in IMG/M
3300007363\|Ga0075458_10274699	Not Available	512	Open in IMG/M
3300007363\|Ga0075458_10280992	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	505	Open in IMG/M
3300008072\|Ga0110929_1072920	Not Available	783	Open in IMG/M
3300008448\|Ga0114876_1239582	Not Available	574	Open in IMG/M
3300009068\|Ga0114973_10006197	Not Available	8067	Open in IMG/M
3300009068\|Ga0114973_10023597	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	3790	Open in IMG/M
3300009068\|Ga0114973_10026074	Not Available	3578	Open in IMG/M
3300009149\|Ga0114918_10027547	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	4118	Open in IMG/M
3300009154\|Ga0114963_10008223	Not Available	7089	Open in IMG/M
3300009154\|Ga0114963_10010206	Not Available	6377	Open in IMG/M
3300009154\|Ga0114963_10062648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2344	Open in IMG/M
3300009154\|Ga0114963_10072641	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2148	Open in IMG/M
3300009154\|Ga0114963_10089019	Not Available	1900	Open in IMG/M
3300009154\|Ga0114963_10089047	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300009158\|Ga0114977_10392848	Not Available	774	Open in IMG/M
3300009183\|Ga0114974_10012027	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	6259	Open in IMG/M
3300009184\|Ga0114976_10622143	Not Available	546	Open in IMG/M
3300009504\|Ga0114946_10608418	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	552	Open in IMG/M
3300010157\|Ga0114964_10098035	Not Available	1457	Open in IMG/M
3300010334\|Ga0136644_10015823	Not Available	5158	Open in IMG/M
3300010334\|Ga0136644_10081054	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300010334\|Ga0136644_10233745	Not Available	1085	Open in IMG/M
3300010354\|Ga0129333_10025819	All Organisms → cellular organisms → Bacteria	5565	Open in IMG/M
3300010885\|Ga0133913_10157844	All Organisms → cellular organisms → Bacteria	6066	Open in IMG/M
3300010885\|Ga0133913_13542455	Not Available	1016	Open in IMG/M
3300012000\|Ga0119951_1009333	All Organisms → cellular organisms → Bacteria	4151	Open in IMG/M
3300012000\|Ga0119951_1032670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1669	Open in IMG/M
3300012000\|Ga0119951_1123467	Not Available	589	Open in IMG/M
3300012012\|Ga0153799_1000812	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	9449	Open in IMG/M
(restricted) 3300013122\|Ga0172374_1112717	Not Available	1029	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10023807	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	5613	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10184018	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	1603	Open in IMG/M
(restricted) 3300013132\|Ga0172372_10943962	Not Available	524	Open in IMG/M
3300013372\|Ga0177922_10066561	Not Available	1359	Open in IMG/M
(restricted) 3300014720\|Ga0172376_10536528	Not Available	650	Open in IMG/M
3300014962\|Ga0134315_1002849	Not Available	3110	Open in IMG/M
3300020498\|Ga0208050_1003148	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2135	Open in IMG/M
3300020547\|Ga0208361_1000063	All Organisms → cellular organisms → Bacteria	40195	Open in IMG/M
3300020570\|Ga0208465_1004205	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2392	Open in IMG/M
3300020570\|Ga0208465_1041976	Not Available	582	Open in IMG/M
3300023179\|Ga0214923_10004301	Not Available	17297	Open in IMG/M
3300023179\|Ga0214923_10018603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	6362	Open in IMG/M
3300023179\|Ga0214923_10027988	Not Available	4777	Open in IMG/M
3300023179\|Ga0214923_10031210	All Organisms → cellular organisms → Bacteria	4427	Open in IMG/M
3300023179\|Ga0214923_10058641	All Organisms → cellular organisms → Bacteria → Proteobacteria	2862	Open in IMG/M
3300023179\|Ga0214923_10075279	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2402	Open in IMG/M
3300023179\|Ga0214923_10106220	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1876	Open in IMG/M
3300023179\|Ga0214923_10206767	All Organisms → Viruses → Predicted Viral	1151	Open in IMG/M
3300023179\|Ga0214923_10208603	Not Available	1143	Open in IMG/M
3300024262\|Ga0210003_1081391	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1524	Open in IMG/M
3300025135\|Ga0209498_1329724	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	510	Open in IMG/M
3300025445\|Ga0208424_1003264	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	1811	Open in IMG/M
3300025445\|Ga0208424_1007897	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1192	Open in IMG/M
3300025445\|Ga0208424_1017993	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	820	Open in IMG/M
3300025630\|Ga0208004_1081604	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	799	Open in IMG/M
3300025872\|Ga0208783_10034722	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	2379	Open in IMG/M
3300025889\|Ga0208644_1044007	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	2537	Open in IMG/M
3300025889\|Ga0208644_1159991	Not Available	1022	Open in IMG/M
3300027581\|Ga0209651_1043436	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300027734\|Ga0209087_1188913	Not Available	798	Open in IMG/M
3300027741\|Ga0209085_1003548	All Organisms → cellular organisms → Bacteria → PVC group	8533	Open in IMG/M
3300027741\|Ga0209085_1022756	All Organisms → cellular organisms → Bacteria	3007	Open in IMG/M
3300027741\|Ga0209085_1040864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2170	Open in IMG/M
3300027741\|Ga0209085_1091257	Not Available	1352	Open in IMG/M
3300027741\|Ga0209085_1122371	Not Available	1124	Open in IMG/M
3300027747\|Ga0209189_1011495	Not Available	5088	Open in IMG/M
3300027747\|Ga0209189_1149536	Not Available	1000	Open in IMG/M
3300027747\|Ga0209189_1187012	Not Available	862	Open in IMG/M
3300027759\|Ga0209296_1030059	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	3003	Open in IMG/M
3300027793\|Ga0209972_10001381	Not Available	21378	Open in IMG/M
3300027793\|Ga0209972_10481668	Not Available	513	Open in IMG/M
3300027805\|Ga0209229_10055566	Not Available	1766	Open in IMG/M
3300027971\|Ga0209401_1038235	Not Available	2265	Open in IMG/M
(restricted) 3300028559\|Ga0247831_1194219	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	758	Open in IMG/M
3300029930\|Ga0119944_1006516	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300029930\|Ga0119944_1032654	Not Available	664	Open in IMG/M
3300029933\|Ga0119945_1015619	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300031857\|Ga0315909_10076243	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	2980	Open in IMG/M
3300031951\|Ga0315904_11306097	Not Available	548	Open in IMG/M
3300032092\|Ga0315905_11413486	Not Available	552	Open in IMG/M
3300033978\|Ga0334977_0000318	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	32106	Open in IMG/M
3300033981\|Ga0334982_0252584	Not Available	847	Open in IMG/M
3300033981\|Ga0334982_0393208	Not Available	632	Open in IMG/M
3300033993\|Ga0334994_0048059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2677	Open in IMG/M
3300033993\|Ga0334994_0134946	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1406	Open in IMG/M
3300034012\|Ga0334986_0154930	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1318	Open in IMG/M
3300034012\|Ga0334986_0249440	Not Available	965	Open in IMG/M
3300034061\|Ga0334987_0004637	All Organisms → cellular organisms → Bacteria	13181	Open in IMG/M
3300034062\|Ga0334995_0075292	Not Available	2641	Open in IMG/M
3300034062\|Ga0334995_0610303	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	632	Open in IMG/M
3300034071\|Ga0335028_0474769	Not Available	697	Open in IMG/M
3300034072\|Ga0310127_005068	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	11502	Open in IMG/M
3300034073\|Ga0310130_0011494	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → unclassified Pirellula → Pirellula sp. SH-Sr6A	3066	Open in IMG/M
3300034092\|Ga0335010_0492571	Not Available	646	Open in IMG/M
3300034101\|Ga0335027_0054672	All Organisms → cellular organisms → Bacteria	3208	Open in IMG/M
3300034101\|Ga0335027_0817120	Not Available	538	Open in IMG/M
3300034103\|Ga0335030_0174313	Not Available	1515	Open in IMG/M
3300034106\|Ga0335036_0023446	Not Available	4926	Open in IMG/M
3300034111\|Ga0335063_0526022	Not Available	570	Open in IMG/M
3300034118\|Ga0335053_0475105	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	742	Open in IMG/M
3300034355\|Ga0335039_0084663	Not Available	1857	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.32%
Terrestrial	Environmental → Terrestrial	1.68%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	80.67%
Marine	Environmental → Aquatic → Marine	17.65%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.68%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	60.50%
Coastal	Environmental → Aquatic → Marine → Coastal	15.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	11.76%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.36%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.68%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.68%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	60.50%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	15.97%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	6.72%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	5.04%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.36%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.68%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.68%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	28.57%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	24.37%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	15.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	5.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	5.04%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.20%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	2.52%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.68%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.68%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	1.68%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.68%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.68%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.84%
Surface Water	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water	0.84%
Water Bodies	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Water Bodies	0.84%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004125	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (version 2)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007216	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300008072	Microbial Communities in Water bodies, Singapore - Site MA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental	Open in IMG/M
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009504	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300012000	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A	Environmental	Open in IMG/M
3300012012	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m	Environmental	Open in IMG/M
3300013122 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m	Environmental	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental	Open in IMG/M
3300014962	Surface water microbial communities from Bangladesh - BaraHaldiaSW0309	Environmental	Open in IMG/M
3300020498	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020547	Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020570	Freshwater microbial communities from Lake Mendota, WI - 31AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300025135	Lake sediment microbial communities from Walker lake, Nevada to study Microbial Dark Matter (Phase II) - Walker Lake 11/02/13 Deep Sediment (SPAdes)	Environmental	Open in IMG/M
3300025445	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025872	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027581	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027747	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027971	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028559 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_1m	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300029933	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727_2	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300033978	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034071	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110	Environmental	Open in IMG/M
3300034072	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A	Environmental	Open in IMG/M
3300034073	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034111	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186	Environmental	Open in IMG/M
3300034118	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1000696143	3300002835	Freshwater	MSAPLITFVGFVYLAVALDQWSKGSPMAIAWAGYALANVGLALAAK*
B570J40625_1002113523	3300002835	Freshwater	MSAPLILIVGVVYLVVAVDQFRQGSPGMAIAWFGYALANVGLAMAAK*
Ga0066182_101289752	3300004125	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAR*
Ga0068877_1000676813	3300005525	Freshwater Lake	MSAPLILGVGAVYLFVALDQYRQGSPGMAIAWFGYALANVGLSMVAK*
Ga0068877_101197855	3300005525	Freshwater Lake	MSTPLILIVGVVYLAVAVDQFRKGDTGMAIAWFGYALANVGLAMVAK*
Ga0068877_103244121	3300005525	Freshwater Lake	VSKTLILAVGAVYLLIACDQWLKGERGMAIAWFGYALANAGLSIAAK*
Ga0079957_10009043	3300005805	Lake	MSTPLILFVGVIYLWVAADQAWKGSPMAIAWFGYALANVGLALAAK*
Ga0079957_13315972	3300005805	Lake	MSSTLILCVGFVYLMVAVDQWAKGSPGMAIAWFGYALANVGLAMNAR*
Ga0075461_100098983	3300006637	Aqueous	MSAPLILAVGVVYLVVALDQYRQGSPGMAIAWAGYALANVGLAMSAK*
Ga0075461_100634573	3300006637	Aqueous	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSAK*
Ga0075461_101472102	3300006637	Aqueous	MSAPLILCVGVVYLVVALDQYRQGANGMAIAWLGYALANCGLAMSAK*
Ga0075471_100306683	3300006641	Aqueous	MSAPLILGVGVVYLLVAVDQYRQGSPGMAIAWAGYALANIGLAMAAK*
Ga0070749_100740304	3300006802	Aqueous	VGVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSVR*
Ga0070749_102019412	3300006802	Aqueous	MSAPLILGVGVVYIVVAYDQWSKGQAGMAIAWASYGLANIGLAMAAK*
Ga0070746_104341251	3300006919	Aqueous	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWAGYAL
Ga0103961_10324963	3300007216	Freshwater Lake	MSSPLILAVGAVYLFVAIDQARKGSVGMALAWLGYAVANVGLAWEAR*
Ga0075460_101485871	3300007234	Aqueous	RAAEDGSMSAPLILCVGVVYLVVALDQYRQGANGMAIAWLGYALANCGLAMSAK*
Ga0075460_102484161	3300007234	Aqueous	VVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSAK*
Ga0075458_102746992	3300007363	Aqueous	VYLVVALDQYRQGANGMAIAWLGYALANCGLAMSAK*
Ga0075458_102809921	3300007363	Aqueous	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLA
Ga0110929_10729203	3300008072	Water Bodies	MSGPLIIGVGVVYLVVAVDQYRQGSPGMALAWLGYALANVGLAMVAK*
Ga0114876_12395821	3300008448	Freshwater Lake	LAVSKTLILAVGAVYLLIACDQWLKGERGMAIAWFGYALANAGLSIAAK*
Ga0114973_1000619714	3300009068	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANCGLAWNAR*
Ga0114973_100235977	3300009068	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDSGMALAWLGYALANVGLAWNAK*
Ga0114973_100260742	3300009068	Freshwater Lake	VSSTLILCVGFVYLMVGVDQFRKGDTGMALAWLGYALANVGLAWNAR*
Ga0114918_100275472	3300009149	Deep Subsurface	VYLFVACDQWAKGDAMAIAWFGYALANVGLALAAK*
Ga0114963_100082232	3300009154	Freshwater Lake	MSSPLILAVAVVYTFVAFDQWRAGNPGMAVAWAGYAVSNCGLAWAASR*
Ga0114963_100102063	3300009154	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAK*
Ga0114963_100626483	3300009154	Freshwater Lake	MSAPLIIGVGVVYLVVAVDQLRHGHPGMAIAWLGYAIANVGLAWQAWR*
Ga0114963_100726412	3300009154	Freshwater Lake	MSSTLILCVGFVYLMVGIDQWSKGSPGMAIAWWGYALANVGLAMNAR*
Ga0114963_100890192	3300009154	Freshwater Lake	MSAPVILFVGGIYLLVAIDQFRKGEVGMSIAWLGYAAANVGLAMAAK*
Ga0114963_100890474	3300009154	Freshwater Lake	VSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAK*
Ga0114977_103928481	3300009158	Freshwater Lake	MSSTLILCVGFVYLMVGIDQFRKGDTGMALAWLGYALANVGLAWNAK*
Ga0114974_100120273	3300009183	Freshwater Lake	VSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGCALANIGLAMAAK*
Ga0114976_106221431	3300009184	Freshwater Lake	STLILCVGFVYLMVGVDQFRKGDTGMALAWLGYALANVGLAMNAK*
Ga0114946_106084182	3300009504	Sediment	MSAPLILFVGGIYLLVAIDQWCKGSPMCIAWLGYAIANIGLAMAAK*
Ga0114964_100980351	3300010157	Freshwater Lake	MSSTLILCVGFVYLMVGIDQWSKGSPGMAIAWWGYALAN
Ga0136644_100158237	3300010334	Freshwater Lake	MSAPLIIGVGVVYLVVAIDQLRHGHPGMAIAWLGYALANVGLAWQAWR*
Ga0136644_100810544	3300010334	Freshwater Lake	MSSTLILCVGFVYLMVGIDQFRKGDPGMALAWLGYALANVGLAWNAR*
Ga0136644_102337453	3300010334	Freshwater Lake	MSSPLIIGVGVVYLVVAVDQWRAGHPGMAIAWLGYALANVGLAWQAWR*
Ga0129333_100258198	3300010354	Freshwater To Marine Saline Gradient	VYLYVACEQAAKGSPMAIAWFGYALANVGLALASK*
Ga0133913_101578442	3300010885	Freshwater Lake	VSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGYALANIGLAMAAK*
Ga0133913_135424552	3300010885	Freshwater Lake	MSAPLILSVAVVYTFVAFDQWRAGNPGMAVAWAGYAVSNCGLAWAASR*
Ga0119951_10093336	3300012000	Freshwater	VSSPLILSVGAVYLLVAADQLRNGHPGMAIAWLGYAIANVGLAWQAWR*
Ga0119951_10326705	3300012000	Freshwater	MSSPLILAVGAVYLAVAVDQARKGETGMAIAWFGYAIANIGLAMSSR*
Ga0119951_11234671	3300012000	Freshwater	LAVGAVYLVVAVDQARKGDTGMAIAWFGYAIANIGLAMSSR*
Ga0153799_10008122	3300012012	Freshwater	MSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGYALANIGLAMAAK*
(restricted) Ga0172374_11127172	3300013122	Freshwater	MSSFLIVCVGVVYAVVACDQWRKGECGMALAWLGYAIANVGLAMNAR*
(restricted) Ga0172367_100238076	3300013126	Freshwater	MSAPLIWFVGVIYLAVALDQWAKGSPMAIAWAGYALANVGLALAAK*
(restricted) Ga0172372_101840183	3300013132	Freshwater	GPQDGGMSAPLILFVALIYLAVALEQWAKGSPMAIEWAGYALANVGLALSSK*
(restricted) Ga0172372_109439621	3300013132	Freshwater	DGGMSAPLILCVGVVYLVVAVDQYRQGSTGMAIAWAGYALANVGLAMSAK*
Ga0177922_100665612	3300013372	Freshwater	MSAPLILGVGVVYLVVALDQYRQGSTGMAIAWAGYALANIGLAMAAK*
(restricted) Ga0172376_105365281	3300014720	Freshwater	GDHGPQDGGMSAPLILFVALIYLAVALDQWAKGSPMAIAWAGYALANVGLALAAK*
Ga0134315_10028494	3300014962	Surface Water	MSAPLILCVGVVYLAVAIDQAMKGSWMGLAWAGYALANVGLALSAK*
Ga0208050_10031483	3300020498	Freshwater	MSAPLITFVGFVYLAVALDQWSKGSPMAIAWAGYALANVGLALAAK
Ga0208361_100006331	3300020547	Freshwater	MSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGYALANIGLAMAAK
Ga0208465_10042054	3300020570	Freshwater	MSAPLILGVGVVYLVVALDQYRQGSTGMAIAWAGYALANIGLAMAAK
Ga0208465_10419761	3300020570	Freshwater	VTRGTDMSAPLILFVGALYVYVAFEQMVRGNTGMAIAWAGYALANVGLAMAAK
Ga0214923_1000430118	3300023179	Freshwater	MSSTLILAVGCVYLVVAIDQARKGSPMAIAWFGYALANVGLALSAK
Ga0214923_1001860311	3300023179	Freshwater	VSSPLILAVGAVYLAVAVDQARKGETGMAIAWFGYAIANIGLAMSSR
Ga0214923_100279886	3300023179	Freshwater	MSAPLILAVGGVYLFVAFDQWRQGNQGMAVAWAGYAVANVGLAWAASR
Ga0214923_100312108	3300023179	Freshwater	VYLYVAFDQCVKGNTGMAIAWAGYAVANVGLAMSAK
Ga0214923_100586414	3300023179	Freshwater	MSAPLILAVGGIYLFVAFDQWRRGEHGMAIAWLGYALANCGLAWAAK
Ga0214923_100752797	3300023179	Freshwater	MSAPLILFVGALYVYVAFEQMVRGNTGMAIAWAGYAIANVGLAMAAK
Ga0214923_101062206	3300023179	Freshwater	MSAPLILAVGAVYLFVAWDQAMRGNHGMSLAWFGYAVANVGLAWAA
Ga0214923_102067673	3300023179	Freshwater	MSAPLILGVGVVYLVVALDQFRQGSPGMALAWFGYAVANVGLAMVAK
Ga0214923_102086034	3300023179	Freshwater	MSAPLILAVGAVYLFVAWDQAMRGNHGMSLAWFGYALANVGLAMAAK
Ga0210003_10813912	3300024262	Deep Subsurface	VSATLIWIVGGVYLFVACDQWAKGDAMAIAWFGYALANVGLALAAK
Ga0209498_13297242	3300025135	Sediment	MSAPLILFVGGIYLLVAIDQWCKGSPMCIAWLGYAIANIGLAMAAK
Ga0208424_10032643	3300025445	Aqueous	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSVR
Ga0208424_10078972	3300025445	Aqueous	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSAK
Ga0208424_10179933	3300025445	Aqueous	MSAPLILAVGVVYLVVALDQYRQGSPGMAIAWAGYALANVGLAMSAK
Ga0208004_10816042	3300025630	Aqueous	MSAPLILCVGVVYLVVALDQYRQGANGMAIAWLGYALANCGLAMSAK
Ga0208783_100347223	3300025872	Aqueous	MSAPLILGVGVVYLLVAVDQYRQGSPGMAIAWAGYALANIGLAMAAK
Ga0208644_10440071	3300025889	Aqueous	GVVYLVVAVDQYRQGSPGMAIAWAGYALANVGLAMSVR
Ga0208644_11599912	3300025889	Aqueous	MSAPLILGVGVVYIVVAYDQWSKGQAGMAIAWASYGLANIGLAMAAK
Ga0209651_10434363	3300027581	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAR
Ga0209087_11889132	3300027734	Freshwater Lake	MSSTLILCVGFVYLMVGIDQFRKGDTGMALAWLGYALANVGLAWNAK
Ga0209085_10035486	3300027741	Freshwater Lake	MSSTLILCVGFVYLMVGIDQWSKGSPGMAIAWWGYALANVGLAMNAR
Ga0209085_10227564	3300027741	Freshwater Lake	VSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAK
Ga0209085_10408644	3300027741	Freshwater Lake	MSAPLIIGVGVVYLVVAVDQLRHGHPGMAIAWLGYAIANVGLAWQAWR
Ga0209085_10912573	3300027741	Freshwater Lake	MSSPLILAVAVVYTFVAFDQWRAGNPGMAVAWAGYAVSNCGLAWAASR
Ga0209085_11223712	3300027741	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANVGLAWNAK
Ga0209189_10114956	3300027747	Freshwater Lake	MSAPLIIGVGVVYLVVAIDQLRHGHPGMAIAWLGYALANVGLAWQAWR
Ga0209189_11495364	3300027747	Freshwater Lake	MSSTLILCVGFVYLMVGIDQFRKGDPGMALAWLGYALANVGLAMNAR
Ga0209189_11870123	3300027747	Freshwater Lake	MSSPLIIGVGVVYLVVAVDQWRAGHPGMAIAWLGYALANVGLAWQAWR
Ga0209296_10300594	3300027759	Freshwater Lake	VSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGYALANIGLAMAAK
Ga0209972_100013818	3300027793	Freshwater Lake	MSAPLILGVGAVYLFVALDQYRQGSPGMAIAWFGYALANVGLSMVAK
Ga0209972_104816682	3300027793	Freshwater Lake	VSKTLILAVGAVYLLIACDQWLKGERGMAIAWFGYALANAGLSIAAK
Ga0209229_100555664	3300027805	Freshwater And Sediment	MSAPLIIGVGLVYLVVALDQYRQGSPGMAIAWFGYALANVGLAMVAK
Ga0209401_10382352	3300027971	Freshwater Lake	MSSTLILCVGFVYLMVGVDQFRKGDPGMALAWLGYALANCGLAWNAR
(restricted) Ga0247831_11942193	3300028559	Freshwater	AVGVVYLVVAVDQYRQGSPGMAIAWFGYALANVGLAMAAK
Ga0119944_10065162	3300029930	Aquatic	MSTPLILIVGVVYLAVAVDQFRKGDTGMAIAWFGYALANVGLAMVAK
Ga0119944_10326542	3300029930	Aquatic	MSAPLILGVGVVYLVVALDQYRQGATGMAIAWFGYALANVGLAMVAK
Ga0119945_10156192	3300029933	Aquatic	MSTPLILIVGVVYLAVAVDQFRKGDSGMAIAWFGYALANVGLAMVAK
Ga0315909_100762432	3300031857	Freshwater	MSAPLILAVGVVYLVVAVDQYRQGSPGMAIAWFGYALANVGLAMAAK
Ga0315904_113060972	3300031951	Freshwater	MSAPLILGVGVVYLVVALDQYRQGSPGMALAWFGYALANVGLAMVAK
Ga0315905_114134861	3300032092	Freshwater	ILGVGAVYLFVALDQYRQGSPGMAIAWFGYALANVGLSMVAK
Ga0334977_0000318_7258_7401	3300033978	Freshwater	MSSTLILCVGFVYLMVGIDQWSKGSPGMAIAWFGYALANVGLAMNAK
Ga0334982_0252584_1_105	3300033981	Freshwater	MSAPLILAVGGVYLIVSLDQYRQGCPGMAIAWFGY
Ga0334982_0393208_184_327	3300033981	Freshwater	MSAPLILIVGVVYLVVAVDQFRQGSPGMAIAWFGYALANVGLAMAAK
Ga0334994_0048059_886_1029	3300033993	Freshwater	MSSTLILCVGFVYLMVAVDQWAKGSPGMAIAWFGYALANVGLAMNAR
Ga0334994_0134946_527_670	3300033993	Freshwater	VSAPLILAVGGVYLIVSLDQYRQGSPGMAIAWLGYALANVGLAMVAK
Ga0334986_0154930_1124_1267	3300034012	Freshwater	MSAPLILGVGVVYIVVAYDQWSKGQAGMAIAWAGYGLANIGLAMAAK
Ga0334986_0249440_209_370	3300034012	Freshwater	MQEYVAVSAPLILAVGVVYLVVAFDQYRQGSPGMAIAWFGYALANVGLSMVAK
Ga0334987_0004637_3646_3786	3300034061	Freshwater	MSAPLILAVGAVYLYVACEQAAKGSPMAIAWFGYALANVGLALAAK
Ga0334995_0075292_833_976	3300034062	Freshwater	MSSPLILAVGVVYLIVAVDQLRKGSPGMAIAWFGYALSNVGLAMAAR
Ga0334995_0610303_375_518	3300034062	Freshwater	MSAPLILGVGVVYLIVALDQYRQGHMGMALAWLGYALANVGLAMAAR
Ga0335028_0474769_121_264	3300034071	Freshwater	MSAPLILAVGAVYVYVAFEQAMRGNTGMAIAWAGYAIANVGLAMAAK
Ga0310127_005068_7904_8047	3300034072	Fracking Water	MSAPLILGVGVVYLVVALDQYRQGSTGMAIAWAGYAIANIGLAMAAK
Ga0310130_0011494_1829_1972	3300034073	Fracking Water	MSAPLILGVGVVYLAVACDQWSKGSTGMAIAWAGYAIANIGLAMAAK
Ga0335010_0492571_1_126	3300034092	Freshwater	MSSTLILCVGFVYLMVAVDQWAKGSPGMAIAWFGYALANVGL
Ga0335027_0054672_699_842	3300034101	Freshwater	MSAPLILCVGVVYLVVALDQYRQGSTGMAIAWAGYAIANIGLAMAAK
Ga0335027_0817120_48_191	3300034101	Freshwater	MSSPLILAVGVVYLVVAVDQYRQGATGMAIAWFGYALANVGLAMAAR
Ga0335030_0174313_30_173	3300034103	Freshwater	MSAPLILAVGGVYLIVSLDQYRQGSPGMAIAWFGYALANVGLAMVAK
Ga0335036_0023446_1505_1648	3300034106	Freshwater	MSSPLILAVGAVYLVVAVDQARKGEAGMAIAWFGYAVANVGLAMSAR
Ga0335063_0526022_2_127	3300034111	Freshwater	LAVGGVYLIVSLDQYRQGSPGMAIAWLGYALANVGLAMVAK
Ga0335053_0475105_2_130	3300034118	Freshwater	MITFVGFVYLAVALDQWSKGSPMAIAWAGYALANVGLALAAK
Ga0335039_0084663_1494_1637	3300034355	Freshwater	MSSGLILAVGVVYLVVAVDQYRQGAPGMAIAWFGYALANVGLAMAAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters