NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134526_1009473

Scaffold Ga0134526_1009473


Overview

Basic Information
Taxon OID3300014961 Open in IMG/M
Scaffold IDGa0134526_1009473 Open in IMG/M
Source Dataset NameWastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Freiburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2776
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Source Dataset Sampling Location
Location NameGermany: Freiburg
CoordinatesLat. (o)48.0Long. (o)8.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083452Metagenome113N
F102167Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0134526_10094731F102167N/AMDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMMGEYMAVLMIKSYDKITESHNLTTFSFHDKDMGGLRRLVSNAIMAVGLRNNPLTGDGNTAIK*
Ga0134526_10094734F083452N/AMSGRVKIKSKDKNKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR*

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