Scaffold Ga0134526_1000475

Overview

Basic Information

• Taxon OID: 3300014961
• Scaffold ID: Ga0134526_1000475
• Source Dataset Name: Wastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Freiburg
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24662
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Source Dataset Sampling Location

• Location Name: Germany: Freiburg
• Coordinates
  • Lat. (^o): 48.0
  • Long. (^o): 8.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134526_100047521	F094005	N/A	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDKTLEKVITLDKKLKKLIEKLNE*
Ga0134526_100047522	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHSNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0134526_100047524	F080163	N/A	MKTIKFLQESFETKERFQQEINIKYSYNLDIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCSANQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESKVLDSEIELLQEKLDLIREEICELIGVDPNLEKQGHEDNYIFNLNIDSDNQIGFLLQATEL*