NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134526_1000104

Scaffold Ga0134526_1000104


Overview

Basic Information
Taxon OID3300014961 Open in IMG/M
Scaffold IDGa0134526_1000104 Open in IMG/M
Source Dataset NameWastewater microbial communities from medical facility sewage samples near Freiburg, Germany - C1747
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Freiburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53892
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Medical Facility Sewage Samples Near Freiburg, Germany

Source Dataset Sampling Location
Location NameGermany: Freiburg
CoordinatesLat. (o)48.0Long. (o)8.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087336Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0134526_100010438F087336GAGGMVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*

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