Scaffold Ga0134572_100141

Overview

Basic Information

• Taxon OID: 3300014931
• Scaffold ID: Ga0134572_100141
• Source Dataset Name: Human fecal microbial community from subjects in taly - 20011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bologna
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17823
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location

• Location Name: Italy
• Coordinates
  • Lat. (^o): 44.4950537
  • Long. (^o): 11.3427401

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134572_10014118	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS*
Ga0134572_10014119	F060985	GGA	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITYLWFLSGFSHIGYGEYHIIRSNRWLKTPIDRINREDYIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*