3300014931: Human fecal microbial community from subjects in taly - 20011

Overview

Basic Information

• IMG/M Taxon OID: 3300014931
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121306 | Gp0151744 | Ga0134572
• Sample Name: Human fecal microbial community from subjects in taly - 20011
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Bologna
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45559849
• Sequencing Scaffolds: 16
• Novel Protein Genes: 31
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Italy
• Coordinates
  • Lat. (^o): 44.4950537
  • Long. (^o): 11.3427401
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F042095	Metagenome	159	N
F044555	Metagenome / Metatranscriptome	154	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F060985	Metagenome / Metatranscriptome	132	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F074964	Metagenome	119	N
F075481	Metagenome	119	N
F076189	Metagenome	118	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F088921	Metagenome	109	N
F089005	Metagenome	109	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N
F092228	Metagenome	107	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0134572_100022	Not Available	61809
Ga0134572_100023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	59017
Ga0134572_100031	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	52006
Ga0134572_100068	Not Available	32803
Ga0134572_100111	Not Available	22769
Ga0134572_100141	All Organisms → cellular organisms → Bacteria	17823
Ga0134572_100228	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	10022
Ga0134572_100378	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	5608
Ga0134572_100399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5351
Ga0134572_101522	All Organisms → cellular organisms → Bacteria	2091
Ga0134572_102275	Not Available	1712
Ga0134572_102697	Not Available	1581
Ga0134572_103337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1420
Ga0134572_106151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1058
Ga0134572_113754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	687
Ga0134572_123750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134572_100022	Ga0134572_10002274	F064817	MNIKNLFNRFRKQEPELSYSLNLIYLKDNKVVFNPNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYESRYWVYDKEPYLLYYKVPLIVNLSRKLSGKEDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0134572_100022	Ga0134572_10002279	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLASNQYKLYPLLLDILKISLKDDFHNHANISNIHYEGGKFPSMLTIQLFNLEF*
Ga0134572_100023	Ga0134572_10002317	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDVKSKDVDDKKESRWPIVWIVAGILMILLVLVYIFKKIKVL*
Ga0134572_100023	Ga0134572_10002318	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSIRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS*
Ga0134572_100023	Ga0134572_10002321	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLIVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLYLSSCYLDRYIKEFNDLPKLTSLNIASGPPDMWNYFDINTLPSFEVDKINPNITDFAFLDDWMNGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITGFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTKNQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0134572_100023	Ga0134572_10002328	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAVRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENVHELLGDDNNKPSFDYRETFYTIGDGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK*
Ga0134572_100023	Ga0134572_10002329	F089592	MNIFNEFNAKKEMKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE*
Ga0134572_100023	Ga0134572_10002342	F058555	MGDLHRLPIHPNNLFRIDETCIFAAKKNLMETKVALLHIMKSNFDKIITERYTPRNIQVKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVFKHVFLRNRMHGGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRWMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTVKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGKIMHIIISEDFIKDVFLGVKGSEMSKAG*
Ga0134572_100023	Ga0134572_10002362	F083452	MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHQNYLNLLEEELGTKLSIDLMDKYIKRNI*
Ga0134572_100023	Ga0134572_10002367	F057001	MTNKELNKVQNEVKKSNEKTLTGAVKAWCNLFKSGKEINDILKENDIKVSKEVVPALVALAKDKEMVIQLCKEILPRVNGTFCAYKEVEREYYDKQEQANNSKLPSDKVSDIAVLGDTHKRFGYCEPIAYTDTDIVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNGK*
Ga0134572_100031	Ga0134572_10003111	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGRGDRPIVVMVEDDNANDYIILRYNETGRRNINGQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV*
Ga0134572_100031	Ga0134572_10003147	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE*
Ga0134572_100031	Ga0134572_1000315	F080673	LATIGINMDEIELLRLQDEALSYLRDNITKDEAYYILTTDKEMLAILIADKKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGINMYFRRQDANAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL*
Ga0134572_100031	Ga0134572_10003156	F076653	MTIRDKYFGWKDIFFSRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0134572_100031	Ga0134572_1000319	F078006	MEDNILKRAAAELKGAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI*
Ga0134572_100068	Ga0134572_10006812	F077313	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGARTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTEVITDDTTIEPDFAKYIRDTYSIKATPKDTYATLMDRYKVKIGLKSAYDDQKKALEKLKKNDKIDDENTKRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGNDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVSGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVETNRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNARTWSDTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVIKGKKG*
Ga0134572_100068	Ga0134572_10006815	F050794	MLYTSHYFVNNRQRQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKAMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0134572_100068	Ga0134572_1000683	F064725	MTIRGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVIKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI*
Ga0134572_100111	Ga0134572_1001115	F090484	MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVSLPKNRILIKIRKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0134572_100141	Ga0134572_10014118	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIERYPFKKYAIPYIFILVVWFIVFLYGLVS*
Ga0134572_100141	Ga0134572_10014119	F060985	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCRIFDNQNHEFWHSVIKPWFQPERFGITYLWFLSGFSHIGYGEYHIIRSNRWLKTPIDRINREDYIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0134572_100228	Ga0134572_1002282	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAEPDHEGEWGSESDLDSESSFMNLVRDKGDDRAFKLLWNFQSENDMTIQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEE*
Ga0134572_100378	Ga0134572_1003781	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGSEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134572_100399	Ga0134572_1003996	F044555	MKTITRITINQNGNQILTCKVCKDINNILFMSNEGILELISGLNYMDNLPIVPDLEKPIEIQITVIREIPIEQNKKVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYISDILQNPEDLISRSNTKEYR*
Ga0134572_101522	Ga0134572_1015222	F092228	MVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADRCDCDELLATKNFLYCYTINYILPRGVANSWVKGYLIDQLAIS*
Ga0134572_102275	Ga0134572_1022753	F099406	MAEVGYNSKFEGHEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVEDNAEAGAVL
Ga0134572_102697	Ga0134572_1026972	F089005	LTKSKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFE
Ga0134572_103337	Ga0134572_1033372	F092227	MNEQKRKRVLRIGCLVLAGVFVLPLLGSIFMMLPL*
Ga0134572_106151	Ga0134572_1061511	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRDKMRSK*
Ga0134572_113754	Ga0134572_1137541	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGANWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0134572_123750	Ga0134572_1237501	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*