NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134572_100111

Scaffold Ga0134572_100111


Overview

Basic Information
Taxon OID3300014931 Open in IMG/M
Scaffold IDGa0134572_100111 Open in IMG/M
Source Dataset NameHuman fecal microbial community from subjects in taly - 20011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bologna
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22769
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location NameItaly
CoordinatesLat. (o)44.4950537Long. (o)11.3427401Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090484Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0134572_1001115F090484N/AMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVSLPKNRILIKIRKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIKDKLVKRFENVQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
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