Scaffold Ga0164310_10177738

Overview

Basic Information

• Taxon OID: 3300014913
• Scaffold ID: Ga0164310_10177738
• Source Dataset Name: Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location

• Location Name: Mexico: Gulf of California
• Coordinates
  • Lat. (^o): 27.0151
  • Long. (^o): -111.3798
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049037	Metagenome / Metatranscriptome	147	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0164310_101777382	F049037	N/A	MEGGRACPDFKLFYDTGKITHHDRSPNWYIDLPPYTITVRELSERCGFGKETNKLKHWLGLKVYQLIEDPLGFYFLRHLDGGIEDLHEGKSSKRLRYAKAACSQVVLEAKVRESTTRQYDHLGAVVRRQMGRNVAALRSDEDQGEN*
Ga0164310_101777383	F060975	AGGAG	MGKTVRRNPVAKHSEEFNKPKTVRDKKKDFYRPDSKREFEEAIEDMGFDEHNRKDAIINQYQDDQARNQEDGWPYED*
Ga0164310_101777384	F097503	GAGG	MDCDTFDGVVEMFEHRMIEGCIANEFKCVYTEETGEFVAEINGKFYVAMIREKK*