Scaffold Ga0180104_1002211

Overview

Basic Information

• Taxon OID: 3300014884
• Scaffold ID: Ga0180104_1002211
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4019
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9517
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047547	Metagenome	149	Y
F091532	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180104_10022116	F091532	GAG	LNRPALVIGAALLVALAVITAVGEWHLPSGEDKLAACRAIPPGSSLTEVLGVLGQPFARQVSDRGEGAVWLEFPRLPTAGRIRAAVHEPTGKVLALRCGADGPDTWAAQD*
Ga0180104_10022117	F047547	GAGG	MREVTYYRWAATLPVVIPFIAHLFYRDNPTIGLVDRLTIPLYVSGIAWPAYIPFAAALFWWLAGQPAARYRRVSWIAPVLFLPPFLAYLLLVRWWTASTEPWAGVLIFYSIVVLLFGYGYVLLTHAGRRMLAWRGRALAA*