NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F091532

Metagenome Family F091532

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F091532
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 108 residues
Representative Sequence VLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPAIAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQD
Number of Associated Samples 92
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 17.76 %
% of genes near scaffold ends (potentially truncated) 28.04 %
% of genes from short scaffolds (< 2000 bps) 71.96 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (74.766 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(18.692 % of family members)
Environment Ontology (ENVO) Unclassified
(42.991 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(37.383 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.27%    β-sheet: 20.45%    Coil/Unstructured: 52.27%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13673Acetyltransf_10 14.95
PF00583Acetyltransf_1 11.21
PF13649Methyltransf_25 6.54
PF08241Methyltransf_11 5.61
PF01925TauE 3.74
PF04307YdjM 2.80
PF13302Acetyltransf_3 2.80
PF08327AHSA1 1.87
PF11008DUF2846 1.87
PF00501AMP-binding 0.93
PF12849PBP_like_2 0.93
PF01527HTH_Tnp_1 0.93
PF00893Multi_Drug_Res 0.93
PF13924Lipocalin_5 0.93
PF13508Acetyltransf_7 0.93
PF01039Carboxyl_trans 0.93
PF01243Putative_PNPOx 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 3.74
COG1988Membrane-bound metal-dependent hydrolase YbcI, DUF457 familyGeneral function prediction only [R] 2.80
COG0777Acetyl-CoA carboxylase beta subunitLipid transport and metabolism [I] 0.93
COG0825Acetyl-CoA carboxylase alpha subunitLipid transport and metabolism [I] 0.93
COG2076Multidrug transporter EmrE and related cation transportersDefense mechanisms [V] 0.93
COG4799Acetyl-CoA carboxylase, carboxyltransferase componentLipid transport and metabolism [I] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms74.77 %
UnclassifiedrootN/A25.23 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000891|JGI10214J12806_12271352Not Available529Open in IMG/M
3300004019|Ga0055439_10002937All Organisms → cellular organisms → Bacteria3392Open in IMG/M
3300004022|Ga0055432_10020443All Organisms → cellular organisms → Bacteria1374Open in IMG/M
3300004025|Ga0055433_10045308All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300004058|Ga0055498_10004904All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300004062|Ga0055500_10018033All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300004114|Ga0062593_101056603Not Available838Open in IMG/M
3300004156|Ga0062589_100043295All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2445Open in IMG/M
3300004156|Ga0062589_101955771All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300004463|Ga0063356_100140840All Organisms → cellular organisms → Bacteria2725Open in IMG/M
3300005206|Ga0068995_10003937All Organisms → cellular organisms → Bacteria1741Open in IMG/M
3300005328|Ga0070676_10017705All Organisms → cellular organisms → Bacteria3943Open in IMG/M
3300005334|Ga0068869_100026126All Organisms → cellular organisms → Bacteria → Proteobacteria4062Open in IMG/M
3300005336|Ga0070680_100288833All Organisms → cellular organisms → Bacteria1390Open in IMG/M
3300005336|Ga0070680_100622040Not Available927Open in IMG/M
3300005526|Ga0073909_10341302Not Available691Open in IMG/M
3300005545|Ga0070695_100007605All Organisms → cellular organisms → Bacteria → Proteobacteria6420Open in IMG/M
3300005549|Ga0070704_101037693All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium743Open in IMG/M
3300005578|Ga0068854_100177416All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1662Open in IMG/M
3300005829|Ga0074479_11132139Not Available535Open in IMG/M
3300005844|Ga0068862_100171695All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. 4D1171941Open in IMG/M
3300006845|Ga0075421_101321752Not Available797Open in IMG/M
3300006847|Ga0075431_101485245All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300009090|Ga0099827_10131123All Organisms → cellular organisms → Bacteria2031Open in IMG/M
3300009147|Ga0114129_10046581All Organisms → cellular organisms → Bacteria → Proteobacteria6093Open in IMG/M
3300009153|Ga0105094_10872788Not Available531Open in IMG/M
3300009157|Ga0105092_10812175Not Available549Open in IMG/M
3300010391|Ga0136847_11879133All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1355Open in IMG/M
3300010397|Ga0134124_10024115All Organisms → cellular organisms → Bacteria5003Open in IMG/M
3300010399|Ga0134127_10128002All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2272Open in IMG/M
3300012685|Ga0137397_10061682All Organisms → cellular organisms → Bacteria2705Open in IMG/M
3300012685|Ga0137397_10113787All Organisms → cellular organisms → Bacteria1990Open in IMG/M
3300012918|Ga0137396_10695901All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium750Open in IMG/M
3300012922|Ga0137394_10049778All Organisms → cellular organisms → Bacteria3457Open in IMG/M
3300012922|Ga0137394_10141642All Organisms → cellular organisms → Bacteria2043Open in IMG/M
3300012925|Ga0137419_10051500All Organisms → cellular organisms → Bacteria2658Open in IMG/M
3300012927|Ga0137416_10064918All Organisms → cellular organisms → Bacteria2623Open in IMG/M
3300012929|Ga0137404_11243466All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300012930|Ga0137407_10011580All Organisms → cellular organisms → Bacteria → Proteobacteria6279Open in IMG/M
3300012930|Ga0137407_10783363Not Available900Open in IMG/M
3300012930|Ga0137407_11213200All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300012944|Ga0137410_10196843All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1559Open in IMG/M
3300014269|Ga0075302_1036472All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300014318|Ga0075351_1057753Not Available739Open in IMG/M
3300014318|Ga0075351_1079957All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300014324|Ga0075352_1162812Not Available635Open in IMG/M
3300014884|Ga0180104_1002211All Organisms → cellular organisms → Bacteria → Proteobacteria4019Open in IMG/M
3300014885|Ga0180063_1020050All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1824Open in IMG/M
3300014885|Ga0180063_1133460Not Available777Open in IMG/M
3300014968|Ga0157379_12464176Not Available520Open in IMG/M
3300015054|Ga0137420_1358054All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1173Open in IMG/M
3300015259|Ga0180085_1053791All Organisms → cellular organisms → Bacteria → Proteobacteria1153Open in IMG/M
3300018000|Ga0184604_10009344All Organisms → cellular organisms → Bacteria2014Open in IMG/M
3300018027|Ga0184605_10269826Not Available773Open in IMG/M
3300018028|Ga0184608_10532686Not Available501Open in IMG/M
3300018061|Ga0184619_10069813All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1550Open in IMG/M
3300018071|Ga0184618_10467802Not Available530Open in IMG/M
3300018076|Ga0184609_10204493Not Available920Open in IMG/M
3300018422|Ga0190265_10015454All Organisms → cellular organisms → Bacteria → Proteobacteria5915Open in IMG/M
3300018422|Ga0190265_10042200All Organisms → cellular organisms → Bacteria → Proteobacteria3905Open in IMG/M
3300018422|Ga0190265_10134606All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2387Open in IMG/M
3300018422|Ga0190265_13154571All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria550Open in IMG/M
3300018429|Ga0190272_10197730All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1449Open in IMG/M
3300018429|Ga0190272_11138324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia760Open in IMG/M
3300019458|Ga0187892_10036355All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales3773Open in IMG/M
3300019487|Ga0187893_10053890All Organisms → cellular organisms → Bacteria4030Open in IMG/M
3300019872|Ga0193754_1023216All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300019879|Ga0193723_1036043All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1480Open in IMG/M
3300019882|Ga0193713_1003339All Organisms → cellular organisms → Bacteria5188Open in IMG/M
3300019882|Ga0193713_1025027All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1763Open in IMG/M
3300019886|Ga0193727_1029683All Organisms → cellular organisms → Bacteria1883Open in IMG/M
3300019889|Ga0193743_1054147All Organisms → cellular organisms → Bacteria1716Open in IMG/M
3300019997|Ga0193711_1005926All Organisms → cellular organisms → Bacteria1534Open in IMG/M
3300019998|Ga0193710_1006919All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1140Open in IMG/M
3300020004|Ga0193755_1033656All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1693Open in IMG/M
3300021073|Ga0210378_10100592All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300022534|Ga0224452_1023382All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1740Open in IMG/M
3300022756|Ga0222622_10188953All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1359Open in IMG/M
3300025324|Ga0209640_10052917All Organisms → cellular organisms → Bacteria3524Open in IMG/M
3300025521|Ga0210083_1023310All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300025535|Ga0207423_1013484All Organisms → cellular organisms → Bacteria1288Open in IMG/M
3300025917|Ga0207660_10138980All Organisms → cellular organisms → Bacteria1856Open in IMG/M
3300025923|Ga0207681_10788768Not Available793Open in IMG/M
3300025942|Ga0207689_10144841All Organisms → cellular organisms → Bacteria1957Open in IMG/M
3300025957|Ga0210089_1009559All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300025965|Ga0210090_1047723Not Available585Open in IMG/M
3300026102|Ga0208914_1039679Not Available573Open in IMG/M
3300026320|Ga0209131_1014441All Organisms → cellular organisms → Bacteria → Proteobacteria4844Open in IMG/M
3300027815|Ga0209726_10196142All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300027909|Ga0209382_10722738Not Available1069Open in IMG/M
3300028380|Ga0268265_11017755All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300028381|Ga0268264_11404028Not Available709Open in IMG/M
3300028536|Ga0137415_10090437All Organisms → cellular organisms → Bacteria2917Open in IMG/M
3300028715|Ga0307313_10295444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium504Open in IMG/M
3300028784|Ga0307282_10599847Not Available534Open in IMG/M
3300028787|Ga0307323_10222432All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium681Open in IMG/M
3300028792|Ga0307504_10074238All Organisms → cellular organisms → Bacteria1029Open in IMG/M
3300028828|Ga0307312_10808436Not Available621Open in IMG/M
(restricted) 3300031197|Ga0255310_10000612All Organisms → cellular organisms → Bacteria8511Open in IMG/M
3300031720|Ga0307469_10185962All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1604Open in IMG/M
3300031740|Ga0307468_100274763Not Available1204Open in IMG/M
3300031740|Ga0307468_100690423Not Available851Open in IMG/M
3300032174|Ga0307470_10557588Not Available848Open in IMG/M
3300032180|Ga0307471_101082279All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300032180|Ga0307471_101280161All Organisms → cellular organisms → Bacteria896Open in IMG/M
3300033233|Ga0334722_10029673All Organisms → cellular organisms → Bacteria4531Open in IMG/M
3300033417|Ga0214471_10113920All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2226Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil18.69%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.02%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands9.35%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.61%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.61%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands4.67%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil3.74%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.80%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.87%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.87%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.87%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.93%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.93%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.93%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.93%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.93%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.93%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.93%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004022Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300004025Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004058Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005206Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014269Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1EnvironmentalOpen in IMG/M
3300014318Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rdEnvironmentalOpen in IMG/M
3300014324Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015259Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10DEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300019872Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300019997Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2EnvironmentalOpen in IMG/M
3300019998Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025521Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025535Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025957Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300025965Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026102Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1227135223300000891SoilGASGAGLARPRTRRVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0055439_1000293753300004019Natural And Restored WetlandsVNRPAVIVGGVLLVALAVVTAMGEYVRWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAA
Ga0055432_1002044333300004022Natural And Restored WetlandsVNRPAVIVGGVLLVALAVVTAMGEYVRWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAAKD*
Ga0055433_1004530823300004025Natural And Restored WetlandsWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAAKD*
Ga0055498_1000490423300004058Natural And Restored WetlandsVNRPALIVGAVLLVALAIVTAAGEYVRRSLPGADDRLTRCRAIPPGSSLREIEAVLGQPFARRMSETVEGAVWLDFSTPPTAAGRIRAVVHEPTGKVLALRCSADGPDTWTAQD*
Ga0055500_1001803313300004062Natural And Restored WetlandsVARPPIRVNRPALIVGGVLLVALAVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAVDAADGTVSLEFSTPSIAAGRIRASVQEPSGKVLALRCSADGPDTWAAKD*
Ga0062593_10105660313300004114SoilVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEP
Ga0062589_10004329533300004156SoilVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0062589_10195577123300004156SoilLCVADPCGAPGARLAWPGPGGLNRPALVVGAVLLVALACVTVVGEYVRWNLPSGEDKLASCRAIPPGSGLPEVVAVLGQPVARQAADMVEGGVWLEFSTPSVATGRIRAAVQEPTGKVLTLRCTADGPDTWTVPE*
Ga0063356_10014084043300004463Arabidopsis Thaliana RhizosphereLNRPALVVGAVLLVALACVTVVGEYVRWNLPSGEDKLASCRAIPPGSGLPEVVAVLGQPVARQAADMVEGGVWLEFSTPSVATGRIRAAVQEPTGKVLTLRCTADGPDTWTVPE*
Ga0068995_1000393733300005206Natural And Restored WetlandsRSLPGADDRLTRCRAIPPGSSLREIEAVLGQPFARRMSETVEGAVWLDFSTPPTAAGRIRAVVHEPTGKVLALRCSADGPDTWTAQD*
Ga0070676_1001770513300005328Miscanthus RhizosphereVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMWQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0068869_10002612653300005334Miscanthus RhizosphereVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0070680_10028883323300005336Corn RhizosphereLNRPALVVGAVLLVALACVTVVGEYVRWNLPSGEDNLASCRAIPPGSGLPEVVAVLGQPVARQAADMVEGGVWLEFSTPSVATGRIRAAVQEPTGKVLTLRCTADGPDTWTVPE*
Ga0070680_10062204013300005336Corn RhizosphereVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSA
Ga0073909_1034130223300005526Surface SoilMNRPAVIVCGVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVPPGSSLTEVVAVLGQPIARHAADVAEGAVWLEFATPSIATGRIRAAVHEPTGRILALRCSADGPDTWAVQD*
Ga0070695_10000760573300005545Corn, Switchgrass And Miscanthus RhizosphereVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVTSGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0070704_10103769313300005549Corn, Switchgrass And Miscanthus RhizosphereMNRPAVIVCGVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVPPGSSLTEAVAVLGQPIARHAADVAEGAVWLEFATPSIATGRIRAAVHEPTGRILALRCSADGPDTWAAQD*
Ga0068854_10017741633300005578Corn RhizosphereVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0074479_1113213913300005829Sediment (Intertidal)VNRPALIVGGVLLVALAVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAADVADGAVSLEFSTPSIAAGRIQASVQEPT
Ga0068862_10017169513300005844Switchgrass RhizosphereVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDT
Ga0075421_10132175213300006845Populus RhizosphereVNRPALIVGAVLLVALAAVTAVGEYVRWHLPSGDDKLTRCRAIPPGSGLAEVVAVLGQPATRQMSETVEGGVWLEFSMVPTTAGRIRVAVHEPTGKVLALRCSVDGPDTWTAPD*
Ga0075431_10148524523300006847Populus RhizosphereAAVTAVGEYVRWHLPSGDDKLTRCRAIPPGSGLAEVVAVLGQPATRQMSETVEGGVWLEFSMVPTTAGRIRVAVHEPTGKVLALRCSVDGPDTWTAPD*
Ga0099827_1013112333300009090Vadose Zone SoilMNRPALIVCGVLLAALAAVTAVGEYVRWHLPSGDDKLAACRSVAPGSSLTEVVAVLGQPITRRVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0114129_1004658153300009147Populus RhizosphereMNRPAVIVCGVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVPPGSSLTEVVAVLGQPIARHAADVAEGAVWLEFATPSIATGRIRAAVHEPTGRILALRCSADGPDTWAAQD*
Ga0105094_1087278813300009153Freshwater SedimentLNRPALIVGAVLFIALAAVTAVGEYVRRNLSSGDDRLAACRAIPPGSSLAEVVAVLGQPYARQVADLAEGAVWLEFPTRPTASDRIRAAVHEPTGKVLALRCSADGPDTWAAQD*
Ga0105092_1081217523300009157Freshwater SedimentVNRPALIVGVALLIALAMITAVGEYVRQRLPGDDKLTRCRAIPPGSSLPEIEAVLGQPFARWMSETVEGAVWLEFRTPSPAAGRIRTGVHEPTAKVLAL
Ga0136847_1187913333300010391Freshwater SedimentVNRPALIVGAVLLAALAVVTAVGEYVRWHLPGGDDKFTRCRAIPPGSSLAEIEAVLGQPFARRMSETVEGAVWLEFSTPATQAGRIRAVVHEPTGKVLALRCSADGLDTWAAPD*
Ga0134124_1002411563300010397Terrestrial SoilVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGVVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0134127_1012800233300010399Terrestrial SoilVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMWQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0137397_1006168253300012685Vadose Zone SoilVNRPALVVGALLLVALAAVTAVGEYVRWNLPNGEEKLTACRAIPPESNLTAVVGVLGQPTMRQAAADLAEGAVWLEFSNPSVASGRIRAAVHAPTGKVLALRCSADGPDTWAARD*
Ga0137397_1011378743300012685Vadose Zone SoilLIVCGVLLVALAAVTAAGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137396_1069590123300012918Vadose Zone SoilVGEYVMWHLPSGDDKLAACRAVVPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTRAAQD*
Ga0137394_1004977833300012922Vadose Zone SoilVGEYVMWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137394_1014164243300012922Vadose Zone SoilVNRPALVVGALLLVALAAVTAVGEYVRWNLPNGEEKLTACRAIPPESNLTAVVGVLGQPTMRQAAADLAEGAVWLEFSNPSVASGRIRAAVHEPTGKVLALRCSADGPDTWAARD*
Ga0137419_1005150053300012925Vadose Zone SoilMWHLPSGDDKLAACRAVVPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137416_1006491853300012927Vadose Zone SoilVLLVALAAVTAVGEYVMWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137404_1124346613300012929Vadose Zone SoilVGEYVRWHLPSGDDKLAACRAVVPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137407_1001158083300012930Vadose Zone SoilEYVRWNLPNGEEKLTACRAIPPESNLTAVVGVLGQPTMRQAAADLAEGAVWLEFSNPSVASGRIRAAVHAPTGKVLALRCSADGPDTWAARD*
Ga0137407_1078336323300012930Vadose Zone SoilVNRPALVVGALLLVALAAVTVVGEYVRWNLPNGEEKLTACRAIPPESNLTVVAGALGQPTMRQAAADLPEGAVWLEFSNPSVASGRIRAAVHEPTGKVLALRCSADGPDTWAARD*
Ga0137407_1121320013300012930Vadose Zone SoilLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0137410_1019684333300012944Vadose Zone SoilVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD*
Ga0075302_103647223300014269Natural And Restored WetlandsVIVGGVLLVALAVVTAMGEYVRWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAAKD*
Ga0075351_105775323300014318Natural And Restored WetlandsVNRPALIVGAVLLVALAIITAAGEYVRRSLPGADDRLTRCRAIPPGSSLREIEAVLGQPFARRMSETVEGAVWLDFSTPPTAAGRIRAVVHEPTGKVLALRCSADGPDTW
Ga0075351_107995723300014318Natural And Restored WetlandsVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAVDAADGTVSLEFSTPSIAAGRIRASVQEPSGKVLALRCSADGPDTWAAKD*
Ga0075352_116281223300014324Natural And Restored WetlandsVNRPALIVGGVLLVALAVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAVDAADGTVSLEFSTPSIAAGRIRASVQEPSGKVLALRCSADGPDTWAAKD*
Ga0180104_100221163300014884SoilLNRPALVIGAALLVALAVITAVGEWHLPSGEDKLAACRAIPPGSSLTEVLGVLGQPFARQVSDRGEGAVWLEFPRLPTAGRIRAAVHEPTGKVLALRCGADGPDTWAAQD*
Ga0180063_102005033300014885SoilLNRPALIVGAVLLIALAAVTAVGEYVRRNLSSGDDRLAACRAIPPGSSLAEVVAVLGQPYARQVADMAEGAVWIEFPTRPTAPGRIRAAVHEPTGKVLALRCSAGGPDTWAAQD*
Ga0180063_113346023300014885SoilLNRPALVIGAALLVALAVITAVGEYVRWHLPSGEDKLAACRAIPPGSSLTEVLGVLGQPFARQVSDRGEGAVWLEFPRLPTAGRIRAAVHEPTGRVLVLRC
Ga0157379_1246417613300014968Switchgrass RhizosphereLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD*
Ga0137420_135805433300015054Vadose Zone SoilMWHLPSGDDKLAACRAVVPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTRAAQD*
Ga0180085_105379123300015259SoilLNRPALIIGAALLVALAVITAVGEYVRWHLPSGEDKLAACRAIPPGSSLTEVLGVLGQPFARQVSDRGEGAVWLEFPRLPTAGRIRAAVHEPTGKVLALRCGADGPDTWAAQD*
Ga0184604_1000934433300018000Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEEAVWLEFATPAIAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQD
Ga0184605_1026982623300018027Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPAIAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQD
Ga0184608_1053268613300018028Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILA
Ga0184619_1006981323300018061Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0184618_1046780223300018071Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLPEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0184609_1020449323300018076Groundwater SedimentMTRPAVIVCGALLVALAVVTAVGEYVRWHLPSGDDKLAGCRAIPPGSSLTEVLAVLGQPIARRVADVAEGAVWLEFSTPAIAAGRIRAAVHEPTGKILALRCNADGPDTWTAQD
Ga0190265_1001545453300018422SoilVNRPALIVGAVLLVALAAVTAVGEYVRWHLPSGDDKLTGCRAIPPGSSLAEVVAVLGQPFARQMSDTPEGAVWLEFSTPPTAGRIRAAVHEPTGKVLALRCSADGPDTWTAPD
Ga0190265_1004220043300018422SoilLNRPALIVGVGLLVALAVVTAVGEYVRQRLPAGEDKLAACRAIPTGSSLAEVMAVLGPPFARQVSDTVEGAVWLEFSTPVASGGRIRVAAHESTGKVLALRCSPDGPDTWAATD
Ga0190265_1013460643300018422SoilVLLVALAAVTAVGEYVRRHLPGADDTVARCRAIPPGSSLTEVVAVLGQPSAQQMSDMAAGAVWLEFPTSSIAAGRIRAAVHEPTEKVLALRCSADGPDTWAATE
Ga0190265_1315457123300018422SoilVALAAVTAVGEYVRWNLPRGDDKLAACRAIPPGSRLAEVVAVLGQPFARVAADMAEGAVWLEFSTLPTAPSRIRAAVHEPTGKVLALRCSADGPDTWAAVD
Ga0190272_1019773023300018429SoilLNRPALIVAAVLVIALAAVTAVGEYVRWNLPRGDDKVSACQAIPPGSGLPAVVAVLGQPFARQIADMAEGAVWLEFPTLPSAPGRIRAAVHEPTGKVLALRCSADGPDTWVATD
Ga0190272_1113832423300018429SoilMTRPAVIVCGVLLVALAVVTAVGEYVRWHLPSGDDKLAGCRAIPPGSSLTEVVAVLGQPSARRVADVAEGAVWLEFSTSAIAAGRIRAAVHEPTGKILALRCSADGPDTWTAQD
Ga0187892_1003635553300019458Bio-OozeVNRPALIVGAVLLVALAAVTVVGEYVRWQLPSGDDKLTRCRAIPPGSGLAEVVAVLGQPATRQISETVEGEIWLEFSTLPTTAGRIRVAVHEPTGKVLALRCSLDGPDTWAAPD
Ga0187893_1005389043300019487Microbial Mat On RocksVNRPALIVGAVLRVALAAVTAVGEYVRWNLPSGDDKLTRCRAIPPGSSLAEVVAALGQPATRQMSETVEGGVWHEFSTLPTTAGRIRVAVHEPTGKVLALRCSVDGPDTWAAPD
Ga0193754_102321623300019872SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIPPGSGLTTVVGVLGPPTMRQAADLAEGAVWLEFSTPTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAALD
Ga0193723_103604323300019879SoilVNRPALVVGAVLLVALAAVTAVGEYVRWHLPRGDEKLTACRAIPPGSSLTTVVGVLGPPTMRQAADLAEGAVWLEFSTPTTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0193713_100333923300019882SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIPPGSSLTTVVGVLGPPTMRQAADLAEGAVWLEFSTPTTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0193713_102502723300019882SoilVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVTVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQD
Ga0193727_102968333300019886SoilVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVAGVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0193743_105414733300019889SoilMNRPAMIVCGVLLVALAVVTAVGEYVRWHLPSGGERIAACGAIPPGSSLTEVVAVLGQPIGRQAAEGAVWLEFSTPSVATGRIRAAVHEPTGKVLALRCSLDGPDTWAAQD
Ga0193711_100592633300019997SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAISPGSSLTTVVGVLGQPTMRQAADLAEGAVWLEFATPTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0193710_100691933300019998SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIPPGSGLTTVVGVLGPPTMRQAADLAEGAVWLEFSTPTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0193755_103365623300020004SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIPPGSGLTTVVGVLGPPTMRQAADLAEGAVWLEFSTPTVVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0210378_1010059223300021073Groundwater SedimentMTRPAVIVCGVLLVALAVVTAVGEYVRWHLPSGDDKLAGCRAIPPGSSLTEVLAVLGQPIARRVADVAEGAVWLEFSTPAIAAGRIRAAVHEPTGKILALRCNADGPDTWTAQD
Ga0224452_102338233300022534Groundwater SedimentMTRPAVIVCGVLLVALAVVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0222622_1018895323300022756Groundwater SedimentVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSRLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0209640_1005291733300025324SoilMRAGARLPGAAGLSRRERPDSGRRRERVNRPAVIVGGVLLVALAVVTAVGQYVRWNLPSGDDNLAGCRAIPPGASVTEVVAVLGRPVARQMADLAEDAVWLEFGTPSLAAGRIRAAVHEPSGKVLTLRCTADGPDTWTAQELSAQ
Ga0210083_102331013300025521Natural And Restored WetlandsWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAAKD
Ga0207423_101348423300025535Natural And Restored WetlandsVNRPAVIVGGVLLVALAVVTAMGEYVRWHLPSGGDELAACRALPPGASVTELVAVLGQPVARQVVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGPDTWAAKD
Ga0207660_1013898023300025917Corn RhizosphereLNRPALVVGAVLLVALACVTVVGEYVRWNLPSGEDNLASCRAIPPGSGLPEVVAVLGQPVARQAADMVEGGVWLEFSTPSVATGRIRAAVQEPTGKVLTLRCTADGPDTWTVPE
Ga0207681_1078876813300025923Switchgrass RhizosphereVNRPALVVGVLLLIALVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD
Ga0207689_1014484143300025942Miscanthus RhizosphereLVAVTAVGEYVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMRQAADLAEGAVWLEFSTPTVASGRIRAAVHEPSGKVLALRCSADGPDTWTAQD
Ga0210089_100955933300025957Natural And Restored WetlandsVNRPALIVGAVLLVALAIVTAAGEYVRRSLPGADDRLTRCRAIPPGSSLREIEAVLGQPFARRMSETVEGAVWLDFSTPPTAAGRIRAVVHEPTGKVLALRCSADGPDTWTAQD
Ga0210090_104772313300025965Natural And Restored WetlandsRVARPPIRVNRPALIVGGVLLVALAVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAVDAADGTVSLEFSTPSIAAGRIRASVQEPSGKVLALRCSADGPDTWAAKD
Ga0208914_103967923300026102Natural And Restored WetlandsVNRPALIVGGVLLVALAVVTAVGEYVRWHLPSGDEKLAACRALPPGASLTELVAVLGQPVARQAVDAADGTVSLEFSTPSIAAGRIRASVQEPSGKVLALRCSADGPDTWAAKD
Ga0209131_101444173300026320Grasslands SoilVNRPALVVGALLLVALAAVTAVGEYVRWNLPNGEEKLTACRAIPPESNLTAVVGVLGQPTMRQAAADLAEGAVWLEFSNPSVASGRIRAAVHEPTGKVLALRCSADGPDTWAARD
Ga0209726_1019614233300027815GroundwaterVNRPEVIVGGVLLVALAVVTAVGEYVPWQLPSGDDKLAACRALPPGASLTELVAVLGPPVARQAVDVADGTVSLEFSTPSIAAGRIQASVQEPTGKVLALRCSADGLDTWAAKD
Ga0209382_1072273833300027909Populus RhizosphereVNRPALIVGAVLLVALAAVTAVGEYVRWHLPSGDDKLTRCRAIPPGSGLAEVVAVLGQPATRQMSETVEGGVWLEFSMVPTTAGRIRVAVHEPTGKVLALRCSVDGPDTWTAPD
Ga0268265_1101775523300028380Switchgrass RhizosphereLNRPALVVGAVLLVALACVTVVGEYVRWNLPSGEDKLASCRAIPPGSGLPEIVAVLGQPVARQAADMVEGGVWLEFSTPSVATGRIRAAVQEPTGKVLTLRCTADGPDTWTVPE
Ga0268264_1140402823300028381Switchgrass RhizosphereVRWNLPSGDEKLTACRAIPPESSLTTVVGVLGQPTMWQAADLAEGAVWLEFSTPTVTSGRLRAAVHQPRGKVLALRCSADGPDTWTAQD
Ga0137415_1009043723300028536Vadose Zone SoilVLLVALAAVTAVGEYVMWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADVAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0307313_1029544423300028715SoilLAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0307282_1059984713300028784SoilVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKVLALRCSADGPDT
Ga0307323_1022243213300028787SoilRWHLPSGDDKLAACRAVAPGSSLTEVVAVLGQPIARQVADGAEGAVWLEFATPSIAAGRIRAAVHEPTGKILALRCSADGPDTWAAQD
Ga0307504_1007423823300028792SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIPPGASLTAVVGVLGQPTMRQAADLAEGAVWLEFSTPTVTPGRIRAAVHEPTGKVLALRCSADGPDTWAAPD
Ga0307312_1080843623300028828SoilVLLVALAAVTAVGEYVRWHLPSGDDKLAACRAVASGSSLTEVVAVLGQPIARQVSDVAEGAVWLEFATPSVAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQD
(restricted) Ga0255310_1000061273300031197Sandy SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGDEKLTACRAIAPGSPLTAVVGVLGQPTLRQAADLADGAVWLEFSTPTIAPGRIRAAVHEPTGKVLALRCSADGPDTWTAPD
Ga0307469_1018596223300031720Hardwood Forest SoilVNRPALIVGAVLLVALAAVTAVGEYVRWTLPRGDEKLTACRAIPPGSSLTTVVGVLGQPTMRQAADLAEGAVWLEFATPTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0307468_10027476313300031740Hardwood Forest SoilMNRPALIVGAALLVALALVTAVGEYVRWNLPSADDKLAACKAIPPGSGLPEIVAVLGQPVARQVADMVEGGVWLEFSTPAVASGRIRAAVQEPA
Ga0307468_10069042323300031740Hardwood Forest SoilVNRPALVVGAVLLVALAAVTAVGEYVRWNLPRGEEKLTACRAIPPGSSLTALVGVLGQPTMRQAADLAEGAVWLEFATPTVAPGRIRAAVHEP
Ga0307470_1055758823300032174Hardwood Forest SoilVNRPALIVGAVLLVALAAVTAVGEYVRWHLPSADDKLNRCRAIPPGSSRAEIEAVLGQPVARWMSETVEGAIWLEFPTLPAAAGRIRAVVHEPTGKVLALRCSADGPDTWAAAD
Ga0307471_10108227923300032180Hardwood Forest SoilVNRPALIVGAVLLVALAAVTAVGEYVRWTLPRGDERLTACRAIPPGSSLTTVVGVLGQPTMRQAADLAEGAVWLEFATPTVAPGRIRAAVHEPSGKVLALRCSADGPDTWAAPD
Ga0307471_10128016123300032180Hardwood Forest SoilMNRPALIVGAALLVALALVTVVGEYVRWNLPSADDKLAACKAIPPGSGLPEIVAVLGQPVARQVADMVEGGVWLEFSTPAVASGRIRAAVQEPAGKVLALRCTADGPDTWAVSE
Ga0334722_1002967353300033233SedimentVNRPALIVGVVLLVALAIVTAVGEYVRWHLPGGGDKLARCQAIPAGSSLTAVVAVLGQPFARQAADMAEGAAWLEFPTPSIAAGRIRAAVHEPTGKVLALRCSADGPDTWAAQE
Ga0214471_1011392023300033417SoilVNRPAVIVGGVLLVALAVVTAVGQYVRWNLPSGDDNLAGCRAIPPGASVTEVVAVLGRPVARQMADLAEDAVWLEFGTPSLAAGRIRAAVHEPSGKVLTLRCTADGPDTWTAQELSAQ

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.