Scaffold Ga0182027_10123622

Overview

Basic Information

• Taxon OID: 3300014839
• Scaffold ID: Ga0182027_10123622
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3080
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000250	Metagenome / Metatranscriptome	1458	Y
F023025	Metagenome / Metatranscriptome	211	Y
F075205	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182027_101236222	F023025	N/A	MLEHAQANDSKYWRNTLTTLHTLTEQASELGQEAKQSVEELGRSAGKKLDEARDETGGALHAAASSVRSTGRQSSKAIDQCSTRTADRLDATASYIEDHDLGDALTGLRKFARRHLTGSMVVAATVGFLAGSAISRVTHSCVRAPEGR*
Ga0182027_101236224	F075205	N/A	MQPGEISRTVSAKGTLDIAENGTFQVDSDCSVRFGLTLPAEGGQVPEPPAMAMRGFLVDGGKAILAFQTDAGAMVTAQLTSDAQKVREQPPRAAGRP*
Ga0182027_101236225	F000250	N/A	LTTLLLAFSVSARDRSALNGTWSLMPAKSDFAGHSVVQTGTVTINERQGNITVTRNFIYDGTSEALFYSDITDSQNGATIHNGKNTKSKTAWDRDVLKVTTTQAGAISSESYALAADGTMMVSVVRPEHKPIVLVFERK*