Scaffold Ga0182030_10001328

Overview

Basic Information

• Taxon OID: 3300014838
• Scaffold ID: Ga0182030_10001328
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50679
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005954	Metagenome / Metatranscriptome	385	Y
F067011	Metagenome / Metatranscriptome	126	Y
F086032	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182030_1000132824	F067011	GGCGG	MLGHSAPMTFVVWSTPHADVTDDFERWYNEVHLPDAIENGSFVAMHRYEAVGPGYRAAPYLSIAEADYGSEAEAWAAVRPRAQALRDAGRIDDLYRVDFATMLLRVAADVSDHPVATLTTVQNDWRHPHGDARAWLGSVPVPAAAPRSVQLLTTDPDGERGPGRHLALFESATDIDATVAAWSGAGTPGSSPLPPYTTIFGVEGSTQPVEVPAADAWVAHWRHLLTVGR*
Ga0182030_1000132833	F005954	AGG	MVARPTPRRVGKSRQRLNALSAKERVVGPATLVLLVSLWLPWFSIGPLSADGLSAHGWLFIAALDSIVLVLYVVIIAFGVGDLAEQGRLSKDQLLALITGVNLALVVLGFLLKPAGLSWSWGAFLALAASIVAFLPFGVPAIEARRRR*
Ga0182030_100013285	F086032	N/A	MPPDDAIDALNGVLSEVIDVVQDVKQAYRKVPYTHEMHGELDRLFEDLRGWATLLMEEDEKLGASALGSMVSVAGRIPANLWPGSPTDEEVRRTILDHLDQLSAHLITARGEQDDEDARLLLDNIQQELMSHVRTMQELSV*