Scaffold Ga0119954_1001109

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1001109
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9100
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (44.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004898	Metagenome / Metatranscriptome	419	Y
F024724	Metagenome / Metatranscriptome	204	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100110913	F024724	GGAG	MIRIKYYYKEYPNTTLSVFLKNEEQVEAFKAKHPDYVYIDE*
Ga0119954_100110915	F004898	GAGG	MDLSELIDELREIAIYESDPQDWMGYMETDDFLVPDSELAY*
Ga0119954_100110918	F032934	N/A	MPILIKQFYNRWYLYWADNGQKIASFATQFEAYSARRFMIEYGKKEKLY*
Ga0119954_100110920	F000744	GGA	MTDIQVNLNVHEIGVILSALQLVNLPEEQIIAREYGSVSALYNKFYTVFEQMDRSSILLKNDVTPSF*
Ga0119954_10011098	F000345	GGAG	MNEENPVVSSEELQKPNNLGKSLQEWWNSDAYKEMQKAHQESLEKAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLMNELGIYPSGFWIDHLMDVHNSLWSYYHDKKIEQELEQDVNKLKAFLENKNETPNESGDATGTH*