Scaffold Ga0119954_1000059

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1000059
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34219
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (63.24%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003393	Metagenome / Metatranscriptome	489	Y
F004132	Metagenome / Metatranscriptome	451	Y
F005348	Metagenome / Metatranscriptome	403	Y
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F008305	Metagenome / Metatranscriptome	335	Y
F011077	Metagenome / Metatranscriptome	295	Y
F012455	Metagenome / Metatranscriptome	280	Y
F047494	Metagenome	149	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100005934	F011077	N/A	MITDNLTWEEEDQNLWKGWTYSLSKNRYYFDDIGNESLAEFWNDPFLNQAYEERL*
Ga0119954_100005936	F070095	AGGA	MEFYADLEYIAFYINNLYPNGVAIELPTWLLVATIGLIYSIRVMRKYK*
Ga0119954_100005938	F047494	AGGA	MNSLLNKKCAKHLPNKLAISLVNDIKYTFCENCEQNIYSHYIEDSELLSYWSSWKVGK*
Ga0119954_100005939	F012455	GGA	MLNEIKNKVIRIQELRRSNAATAIPNKKKYTRKVKHKNGKTK*
Ga0119954_100005944	F005348	AGG	MINSVMSFDCNECNGKGLIFWGDNLDYNVEKCECDNFALGNLF*
Ga0119954_100005950	F003393	GAGG	MIDLENDDTIQIVDYVKVDLLTSGQLEIDDCILIGDEVVSIVDIVSLPDGYTLKVVNDFGERDIIEVGEYDQFDLMMLQ*
Ga0119954_100005956	F004132	GAG	MTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGREAEKRLAEKRLDVSWLEDQVAEWYDPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEVEDFDLSNVTIDVDLSSYEYDADLVVDEVSLEDHY*
Ga0119954_100005960	F008305	N/A	MLGYTYSDIQAFGNSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTFYG*
Ga0119954_100005961	F007112	AGGAG	MHTLHYISVEADNKQEAFDKVVVALSPNEDGYRLADWSDWHVVGGGRYSSNANKENNLMAGYNDDPTDVIGYAEDKEKFQETLINVGKWKSHAMNRAIKEFNSDKFISDMVDYASEGGRSEYNGNTIMNAYTVKETATMLMGGWIPDSGFYDLEENIAETTYLKERLDKPEQAALQYLVPVDFHF*
Ga0119954_100005963	F006844	GGAG	LARWEIEVIFEPTGDYMNFEYETDTEDEDTIYREIENQLSIVPILVEKNEEE*