Scaffold Ga0119954_1000034

Overview

Basic Information

• Taxon OID: 3300014819
• Scaffold ID: Ga0119954_1000034
• Source Dataset Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Institute of Technology
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42145
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (40.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -83.96

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054636	Metagenome / Metatranscriptome	139	Y
F059435	Metagenome / Metatranscriptome	134	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091930	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0119954_100003421	F059435	N/A	MNTYNIDVKGISILSQIPQNDLQKNLKIIRGLVWTSGGNDKDIEVTLNKTNPPCKI*
Ga0119954_100003422	F054636	N/A	MKLEFDEFEKDLLIDTIQHRLDTDKVLIINNSLKEELTELLRKVEEDEYL*
Ga0119954_100003438	F091930	GAGG	MSADELVLHKDYEDFASYLGVDYEDYVELVGDFELSEDEIEYALSI*
Ga0119954_100003440	F085684	N/A	MKSPIVYAYAEIEKAYNIFKEVIERENKLHEMDMTIMTQHLDLLEDEIIPLLEEIVYFDPSP*