Scaffold Ga0134300_1005773

Overview

Basic Information

• Taxon OID: 3300014818
• Scaffold ID: Ga0134300_1005773
• Source Dataset Name: Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Battelle Memorial Institute, Gulf Coast Restoration Organization
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5530
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities To Study Oil Droplet Degradation From Trondheimsfjord, Norway

Source Dataset Sampling Location

• Location Name: Norway: Trondheimsfjord
• Coordinates
  • Lat. (^o): 63.43
  • Long. (^o): 10.43
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038423	Metagenome	166	Y
F040181	Metagenome	162	N
F060346	Metagenome	133	N
F090875	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134300_100577310	F090875	AGG	MTAEELELCGDRLDSVRDLLELLPNELGSWKYAYWYKVYTHLYDKLEAAENLRCSVKE*
Ga0134300_100577313	F060346	GGA	MALDMDEIVGDSQFHKSVMYCYNDRTHSFMFYTPSGDGKQIVPIGMFSPIIEEEIPYDPAALVELIADFMSRAKDTFDIDII*
Ga0134300_100577316	F040181	AGGAG	MNFNWLGNDGDIYRSLKGIANKGGYFGSINQANFWMRCAQESGVHVGPGFSWDDSVELEPGEFMFFCEGSIGANYTTQAGLQRQGWGRKTRYKTWGFVVDAAGVSLIYQLYRSYNDDEGGSYPNGSRTEVIWRRDNELVEATIAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVATRDGRWGTTNLYIIKTSDGNTLKYSGTNHYGKLSKITGRFTVKQHTEYNGELQTVINRPHKVESEVLDDTNG*
Ga0134300_100577318	F038423	GAG	MTDHDYFIFNLERKQARIKEAIKAYKKQYLSDTASSALPKRKKPDSGADLKSKLLGK*